Pinned Repositories
AB-Genotypes-to-ATGC-Illumina
Python script to convert AB genotypes to ATGC for illumina arrays
AdventOfCode2018
Solutions to the 2018 adventofcode at https://adventofcode.com/
AutoPCA_Match
Auto Matching of cases and controls by principal components
awesome-public-datasets
An awesome list of high-quality open datasets in public domains (on-going). By everyone, for everyone!
FASTQ_to_FASTA
A python script to convert FASTQ to FASTA
get_common_snps
This python script will take 2 or more snplists as created by PLINK --write-snplist and create a list with common snps found across all the list
plinkMerge
hibagPred
imputePipeline
peptMaker
adiamb's Repositories
adiamb/get_common_snps
This python script will take 2 or more snplists as created by PLINK --write-snplist and create a list with common snps found across all the list
adiamb/plinkMerge
adiamb/120-Data-Science-Interview-Questions
Answers to 120 commonly asked data science interview questions.
adiamb/academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
adiamb/adiamb.github.io
adiamb/Advent2020
Advent of Code 2020 solutions
adiamb/advent2021
solutions to https://adventofcode.com/
adiamb/AdventofCode2019
adiamb/alphafold
Open source code for AlphaFold.
adiamb/bio
Bioinformatic infrastructure libraries
adiamb/code_playground
adiamb/dash-bio
Open-source bioinformatics components for Dash
adiamb/facenet
Face recognition using Tensorflow
adiamb/ganttrify
Create beautiful Gantt charts with ggplot2
adiamb/ghidra
Ghidra is a software reverse engineering (SRE) framework
adiamb/HIBAG_PARSING
Script to parse HIBAG output and write out a csv file
adiamb/HLA_HIBAG
adiamb/igblast
adiamb/IMPUTE_PIPELINE_MIGNOT_SLURM_VER
This pipeline is a slurm version of the IMPUTE_PIPELINE
adiamb/kpi
Structural interpretation of Killer cell immunoglobulin-like Receptors (KIR) haplotypes from raw short or long read sequences. It predicts the presence/absence of 16 KIR genes and then uses that to predict pairs of structural (gene-content and order) haplotypes.
adiamb/libphonenumber
Google's common Java, C++ and JavaScript library for parsing, formatting, and validating international phone numbers.
adiamb/minorAlleleFreq
adiamb/MULTI-seq
R implementation of MULTI-seq sample classification workflow
adiamb/Narcolepsy_immunology_2018
Scripts used in the manuscript titled "Autoimmunity to hypocretin and molecular mimicry to flu in Type 1 narcolepsy"
adiamb/peptMaker
adiamb/python-docx
Create and modify Word documents with Python
adiamb/Remove-duplicate-snps-plink
A python script to remove duplicate snps from plink files and recode the resultant files into plink binaries free of duplicate snps
adiamb/Scout
Surveillance Detection Scout: Your Lookout on Autopilot
adiamb/waymo-open-dataset
Waymo Open Dataset
adiamb/website