Pinned Repositories
AB-Genotypes-to-ATGC-Illumina
Python script to convert AB genotypes to ATGC for illumina arrays
AdventOfCode2018
Solutions to the 2018 adventofcode at https://adventofcode.com/
AutoPCA_Match
Auto Matching of cases and controls by principal components
awesome-public-datasets
An awesome list of high-quality open datasets in public domains (on-going). By everyone, for everyone!
FASTQ_to_FASTA
A python script to convert FASTQ to FASTA
get_common_snps
This python script will take 2 or more snplists as created by PLINK --write-snplist and create a list with common snps found across all the list
plinkMerge
hibagPred
imputePipeline
peptMaker
adiamb's Repositories
adiamb/LSTM_for-DQ0602-prediction
A keras based LSTM network to predict peptide binding to HLA-DQ0602
adiamb/pyPING
adiamb/BYONIC-readout-analysis
These scripts will take an byonic mass spec aligned csv files and process the same for point mutations when given a reference NCBI protein ID
adiamb/courses
fast.ai Courses
adiamb/cs231n.github.io
Public facing notes page
adiamb/data-police-shootings
The Washington Post is compiling a database of every fatal shooting in the United States by a police officer in the line of duty in 2015 and 2016.
adiamb/dbg
Naive de Bruijn graph implementation in python
adiamb/deep-learning-with-python-notebooks
Jupyter notebooks for the code samples of the book "Deep Learning with Python"
adiamb/DeepLearningTutorials
Deep Learning Tutorial notes and code. See the wiki for more info.
adiamb/demuxlet
Genetic multiplexing of barcoded single cell RNA-seq
adiamb/DoubletDetection
Doublet detection in single-cell RNA-seq data.
adiamb/DSB2017
Code for 2nd place solution to the 2017 National Data Science Bowl
adiamb/gluon-api
A clear, concise, simple yet powerful and efficient API for deep learning.
adiamb/hacker-scripts
Based on a true story
adiamb/hail
Scalable genetic data analysis.
adiamb/hera
adiamb/IRIS-Neural-Network-classification
This repository implements a keras based neural network which achieve over 95% prediction accuracy
adiamb/lstm-gender-predictor
Predict the gender of a name using LSTM
adiamb/Mass_spec_analysis_vaccines
Analysis of mutations in mass spec profiles of influenza vaccines
adiamb/mhcflurry
Peptide-MHC binding affinity prediction
adiamb/mysql-server
MySQL Server, the world's most popular open source database, and MySQL Cluster, a real-time, open source transactional database.
adiamb/planet-amazon-deforestation
The open source repository for the Kaggle Amazon forest devastation competition https://www.kaggle.com/c/planet-understanding-the-amazon-from-space
adiamb/post--misread-tsne
How to Use t-SNE Effectively
adiamb/rex
Friendly regular expressions for R.
adiamb/scleroderma
adiamb/Selenium_webscraping-
I used python based selenium driver for a simple webscraping project
adiamb/styleguide
Style guides for Google-originated open-source projects
adiamb/tcr-dist
Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
adiamb/tf-stanford-tutorials
This repository contains code examples for the course CS 20SI: TensorFlow for Deep Learning Research.
adiamb/tracer
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data