Pinned Repositories
AB-Genotypes-to-ATGC-Illumina
Python script to convert AB genotypes to ATGC for illumina arrays
AdventOfCode2018
Solutions to the 2018 adventofcode at https://adventofcode.com/
AutoPCA_Match
Auto Matching of cases and controls by principal components
awesome-public-datasets
An awesome list of high-quality open datasets in public domains (on-going). By everyone, for everyone!
FASTQ_to_FASTA
A python script to convert FASTQ to FASTA
get_common_snps
This python script will take 2 or more snplists as created by PLINK --write-snplist and create a list with common snps found across all the list
plinkMerge
hibagPred
imputePipeline
peptMaker
adiamb's Repositories
adiamb/FASTQ_to_FASTA
A python script to convert FASTQ to FASTA
adiamb/AB-Genotypes-to-ATGC-Illumina
Python script to convert AB genotypes to ATGC for illumina arrays
adiamb/AdventOfCode2018
Solutions to the 2018 adventofcode at https://adventofcode.com/
adiamb/AutoPCA_Match
Auto Matching of cases and controls by principal components
adiamb/GWA_tutorial
A comprehensive tutorial about GWAS and PRS
adiamb/Python-programming-exercises
100+ Python challenging programming exercises
adiamb/Algorithms_Solutions
my implementations of some common algorithmic questions
adiamb/autokeras
This is a automated machine learning (AutoML) package based on Keras.
adiamb/doc-ANNOVAR
Documentation for the ANNOVAR software
adiamb/fashion-mnist
A MNIST-like fashion product database. Benchmark :point_right:
adiamb/Fastq-to-Fasta
adiamb/HackerRank
HackerRank Solutions in Python3
adiamb/LDmap
A class method to map LD structure of top snps associated with a trait to 1000genomes and further indicate if top snps from GWAS meta were genotyped or not
adiamb/markdown-here
Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.
adiamb/mat2vec
Supplementary Materials for Tshitoyan et al. "Unsupervised word embeddings capture latent knowledge from materials science literature", Nature (2019).
adiamb/Palantir
Single cell trajectory detection
adiamb/PING
Pushing Immunogenetics to the Next Generation
adiamb/Python
All Algorithms implemented in Python
adiamb/Random-GWAS-scripts
adiamb/rclone
"rsync for cloud storage" - Google Drive, Amazon Drive, S3, Dropbox, Backblaze B2, One Drive, Swift, Hubic, Cloudfiles, Google Cloud Storage, Yandex Files
adiamb/RDIPrediction
adiamb/Single_TCR_Sequencing_Stanford
This is a pipeline to process from raw Flash merged Fastq to Blast outputted text files of the single cell TCR sequencing performed at Stanford HIMC
adiamb/Skeleton
Skeleton: A Dead Simple, Responsive Boilerplate for Mobile-Friendly Development
adiamb/smanage
Slurm Manage for submitting and useful reporting on job arrays
adiamb/SNPTEST-Scripts
A python scripts to split imputed oxford genotype probabilities into chunks for parallel computation using snptest and update sample file needed for analysis
adiamb/SpotifyPlaylistGenerator
A script to scrap BillBoard Top charts and create weekly playlist
adiamb/SQL
Updated version of workshop for 2018-2019
adiamb/TCellR_Analysis_Scripts
Misc scripts used to analyze the Next Gen Seq of TCR chains
adiamb/TCR_BULK_SEQUENCING_MIGNOT_PIPELINE
adiamb/writeToDb
A python script to write csv files into a sqlite3 database