/SNPTEST-Scripts

A python scripts to split imputed oxford genotype probabilities into chunks for parallel computation using snptest and update sample file needed for analysis

Primary LanguagePython

SPLIT_OXFORD_GEN_FILE

A python script to split imputed oxford genotype probabilities into chunks for parallel computation using snptest

Usage

python split_impute.py input_file 1000 output_file #input_file no_of_chunks-should be int output_file# for e.g the above command splits this file into 1000 + 1 chunks