HLA prediction quality
Opened this issue · 1 comments
rcanovas commented
Is there any way to obtain the quality (r2 or INFO) of imputing HLA-* ?
So far, after doing the prediction I can only see the alleles and only one probability.
zhengxwen commented
Use that probability for a pair of alleles, and a threshold 0.5.
Or output all prob. of the full pairs of alleles,
hlaPredict(object, snp, type="prob")