jfnavarro/hla_pipeline

Issues

• Replace the in-house epitope generation function

  #27 opened 4 years ago by jfnavarro
  0

• Replace Annovar for VEP

  #24 opened 4 years ago by jfnavarro
  0

• Replace varscan for strelka in rna_pipeline

  #37 opened 4 years ago by jfnavarro
  0

• Adjust the behaviour of the percentiles in merge_results

  #23 opened 4 years ago by jfnavarro
  0

• Find a way to pull Strelka from conda in Python 3

  #34 opened 4 years ago by jfnavarro
  0

• Variant calling for HLAs

  #33 opened 4 years ago by jfnavarro
  0

• Create a docker template (latest)

  #32 opened 4 years ago by jfnavarro
  0

• Add an entry in the docs on how to run MultiQC

  #31 opened 4 years ago by jfnavarro
  0

• Allow to pass workdir as parameter

  #30 opened 4 years ago by jfnavarro
  0

• Add a tool to compute clonality

  #29 opened 4 years ago by jfnavarro
  0

• Kmer epitope distance as parameter in merge_results.py

  #28 opened 4 years ago by jfnavarro
  0

• Add unittests

  #26 opened 4 years ago by jfnavarro
  0

• Replace GATK3 mergeVariants

  #25 opened 4 years ago by jfnavarro
  0

• Añadir coverage a multianno file

  #2 opened 4 years ago by aathie
  0