lipidomics

There are 69 repositories under lipidomics topic.

  • xieguigang/mzkit

    Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.

    Language:Visual Basic .NET563617

  • ahmohamed/lipidr

    Data Mining and Analysis of Lipidomics datasets in R

    Language:R2955213

  • pyQms/pyqms

    pyQms, generalized, fast and accurate mass spectrometry data quantification

    Language:Python28579

  • wenbostar/metaX

    metaX: a flexible and comprehensive software for processing omics data.

    Language:R2351812
  • maven

    eugenemel/maven

    Maven GUI: Metabolomics Analysis and Visualization Engine

    Language:C++20474810

  • idslme/IDSL_MINT

    A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data

    Language:Python19421

  • respiratory-immunology-lab/metabolome-lipidome-MSDIAL

    Guide to processing raw LCMS metabolomic and lipidomic data using MS-DIAL, followed by data pre-processing and secondary annotation (of metabolites) in R.

    Language:R15116

  • saezlab/lipyd

    Python module for lipidomics LC MS/MS data analysis

    Language:Python15563
  • LipidLynxX

    SysMedOs/LipidLynxX

    LipidLynxX provides the possibility to convert, cross-match, and link various lipid annotations to the tools supporting lipid ontology, pathway, and network analysis aiming systems-wide integration and functional annotation of lipidome dynamics in health and disease.

    Language:Python143156
  • IDSL.IPA

    idslme/IDSL.IPA

    Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidomics, exposomics, and environmental studies.

    Language:R13421

  • lifs-tools/awesome-lipidomics

    A collection of awesome lipidomics tools and resources

    12503

  • lifs-tools/goslin

    Goslin is the Grammar on succinct lipid nomenclature.

    Language:ANTLR116252
  • IDSL.UFA

    idslme/IDSL.UFA

    United Formula Annotation (UFA) for LC-HRMS data

    Language:R8101

  • vanmooylipidomics/LOBSTAHS

    Git repository for the R package "LOBSTAHS" (Lipid and Oxylipin Biomarker Screening Through Adduct Hierarchy Sequences)

    Language:R8112912

  • EuBIC/ReproducibleMSGuidelines

    This project aims at defining a set of guidelines for reproducible mass spectrometry-based experiments.

    Language:JavaScript711301

  • SysMedOs/lipidhunter

    LipidHunter is capable to perform bottom up identification of lipids from LC-MS/MS and shotgun lipidomics data by resembling a workflow of manual spectra annotation. LipidHunter generates interactive HTML output with its unique six-panel-image, which provides an easy way to review, store, and share the identification results.

    Language:Python73107

  • barupal/ADNI

    Alzheimer's Disease Neuroimaging Initiative: Untargeted Lipidomics Analysis

    Language:R6201

  • BioinfOMICS/LipidSigR

    R package for Analyzing Lipidomic Datasets

    Language:R5160

  • idslme/IDSL.MXP

    A light weight and fast parser for reading mzML, mzXML and netCDF data files

    Language:R5200

  • computational-metabolomics/dimspy-galaxy

    Galaxy tools for Python package DIMSpy: data processing of Direct-Infusion Mass Spectrometry-based metabolomics and lipidomics data

    4414

  • lifs-tools/jgoslin

    Java implementation of the latest shorthand nomenclature.

    Language:Java4320

  • lifs-tools/rmzTab-m

    The R-language bindings for mzTab-M

    Language:R43151

  • ShinyFabio/ADViSELipidomics

    ADViSELipidomics is a novel Shiny app for the preprocessing, analysis, and visualization of lipidomics data.

    Language:R4210

  • SLINGhub/LICAR

    Functions and a Shiny app to correct class-based separation LC-MRM-MS lipidomics data for isotopic interferences

    Language:R4322

  • syjgino/SLA

    A DMS Shotgun Lipidomics Workflow Application to Facilitate High-Throughput, Comprehensive Lipidomics

    Language:Python4423

  • SysBioChalmers/SLIMEr

    Collection of scripts for improving lipid constraints in yeast-GEM

    Language:MATLAB4411

  • anitamnd/MetaboLink

    Repository for metabolomics and lipidomics data processing app.

    Language:R3102

  • lifs-tools/pygoslin

    Python implementation of parsers for the Grammars on succinct lipid nomenclature (Goslin).

    Language:Python3332

  • RayLabIIITD/pyLFDA

    pyLFDA is a tool which allows analysis of pairwise lipid force distribution along with other functions such as curvature and diffusion.

    Language:Jupyter Notebook3100

  • ricoderks/lipidomics

    A shiny app for my lipidomics workflow.

    Language:R32310

  • Chika-Ugwuodo/MultiOmics

    This repository contains codes I wrote mostly in R to perform various kinds of analysis of multi-omics datasets.

    Language:R2100

  • Harel-lab/APRT-sex-differences

    Language:Jupyter Notebook2200

  • InnovativeOmics/Core-Match

    Core scripts for FluoroMatch, LipidMatch, and PolyMatch

    Language:R2101

  • IPHYS-Bioinformatics/LORA

    LORA: Lipid Over-Representation Analysis

    Language:Python2000

  • SLINGhub/iSLS10

    iSLS10 data analysis workshop

    Language:R2202

  • eagomezc/Machine-Learning-and-RA-treatment

    This repository contains the script used to study blood pro-resolving mediators as biomarkers to predict the response of DMARD treatment in rheumatoid arthritis patients

    Language:R1100