EuBIC/ReproducibleMSGuidelines

Issues

• Make guideline items identifiable

  #36 opened 5 years ago by veitveit
  3

• Guidelines 290: All relevant, non-default settings, such as precursor ion tolerance, fragment ion tolerance, in-silico digestion rule (ie. enzyme), allowed missed cleavages, static and variable post-translational modifications are specified

  #35 opened 5 years ago by mlocardpaulet
  0

• Guidelines 243: The protein sequence database used including the exact version/date of download (if a release version is not available) are described

  #34 opened 6 years ago by viikiid
  3

• New item: Use of Docker images

  #15 opened 6 years ago by jgriss
  8

• Guidelines 354: Any transformation of data (e.g. log transformation) manually or as part of a software function/test is specified including the order that these transformations were performed

  #30 opened 5 years ago by mlocardpaulet
  1

• Guidelines 140: All used software is named including the exact version and the availability

  #33 opened 5 years ago by viikiid
  1

• Typo's

  #16 opened 5 years ago by swillems
  2

• Guidelines 90: For metanalysis papers, the identifiers of all reanalyzed datasets are mentioned in the manuscript

  #23 opened 6 years ago by mlocardpaulet
  2

• Guidelines 364: If the software supports the export of the statistical analysis steps (for example R scripts) these are submitted as supplementary data

  #31 opened 6 years ago by mlocardpaulet
  2

• Guidelines 248: The method used to create a decoy database is specified

  #29 opened 6 years ago by mlocardpaulet
  2

• Guidelines 189: Demo data is provided for newly developed software

  #28 opened 6 years ago by mlocardpaulet
  0

• Guidelines 179: A README file is provided that specifies the system requirements, installation guide, and instructions for use

  #27 opened 6 years ago by mlocardpaulet
  0

• Guidelines 167: The operating system and its version under which the analysis was carried out is specified

  #26 opened 6 years ago by mlocardpaulet
  0

• Guidelines 121: The identifier to the genomics (e.g. GWAS or RNA-seq) dataset is cited in the manuscript

  #25 opened 6 years ago by mlocardpaulet
  0

• Guidelines 111: The Quantitative information of is made available in the HUPO-PSI standard file format mzTab.

  #24 opened 6 years ago by mlocardpaulet
  0

• guidelines ordering

  #22 opened 6 years ago by mlocardpaulet
  1

• Add collapse all button

  #6 opened 6 years ago by jgriss
  2

• [viewer] Firefox only prints first page

  #21 opened 6 years ago by jgriss
  0

• Add css rendering for print version

  #20 opened 6 years ago by jgriss
  1

• Sort items according to level

  #7 opened 6 years ago by jgriss
  1

• Linked pages through top-level tabs

  #19 opened 6 years ago by swillems
  3

• We need to review best way to include references in the description

  #17 opened 6 years ago by ypriverol
  2

• Change section item GitHub link to create new issue

  #12 opened 6 years ago by jgriss
  1

• Should guideline sections be collapsed when opening the document?

  #11 opened 6 years ago by jgriss
  1

• Add TOC to viewer

  #4 opened 6 years ago by jgriss
  0

• Fetch remaining sections from markdown file

  #10 opened 6 years ago by jgriss
  0

• Add E-Mail link to items

  #5 opened 6 years ago by jgriss
  0

• It would be great to filter also by Category bold, silver and bronze

  #9 opened 6 years ago by ypriverol
  0

• Add field toggles to reduced menu

  #3 opened 6 years ago by jgriss
  0

• It should be possible to unselect al the fields

  #8 opened 6 years ago by ypriverol
  0