mri-brain

Angeluz-07/MRI-preprocessing-techniques

Code examples of the free course in Youtube of brain MRI preprocessing techniques in python

rmsouza01/MC-MRI-Rec

dipterix/threeBrain

3D Visualization of Brain MRI

ChristianGaser/cat12

Computational Anatomy Toolbox for SPM12 or SPM25

tayebiarasteh/federated_he

Federated learning with homomorphic encryption enables multiple parties to securely co-train artificial intelligence models in pathology and radiology, reaching state-of-the-art performance with privacy guarantees.

KUL-Radneuron/KUL_VBG

A workflow to allow Freesurfer recon-all to run on brain image with gliomas

raun1/MICCAI2018---Complementary_Segmentation_Network-Raw-Code

The following is a new architecture for robust segmentation. It may perform better than a U-Net :) for binary segmentation. I will update the code when I have some spare time within the next month. However you can simply read this one and will soon notice the pattern after a bit

ahmedgh970/brain-anomaly-seg

Transformer-based Models for Unsupervised Anomaly Segmentation in Brain MR Images

wwu-mmll/deepmriprep

Neural network-based preprocessing of MRI data: Prepping brain images in seconds 🔥

BRAIN-TO/GIRFReco.jl

An Open-Source End-to-End Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia

FinnBehrendt/Conditioned-Diffusion-Models-UAD

Codebase for Conditioned Diffusion Models for Unsupervised Anomaly Detection

elayden/MRIqual

A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI

dipterix/three-brain-js

Javascript engine for 3D brain model (used by RAVE project)

Sourav-B98/ALZHEIMERS-PREDICTION-CNN

This Machine Learning course project is on 3D MRI image analysis for Alzheimer's disease prediction. Transfer Learning is used for classification and analysis of images.

elayden/NIfTI-Studio

A toolbox for NIfTI and Analyze medical image visualization, editing, and 3D rendering

FeliMe/brain_sas_baseline

Official implementation of the paper "Challenging Current Semi-Supervised Anomaly Segmentation Methods for Brain MRI" accepted to the MICCAI 2021 BrainLes workshop

Open-Minds-Lab/mrQA

mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance

SABS-R3-projects/Paint4Brains

A brain MRI segmentation tool that provides accurate robust segmentation of problematic brain regions across the neurodegenerative spectrum. The methodology is generalisable to perform well with the typical variance in MRI acquisition parameters and other factors that influence image contrast.

ejcanalesr/multicomponent-T2-toolbox

Non-parametric T2 relaxometry methods for myelin water quantification

damianpolakpjwstk/alzheimer_disease_classification_tools

Tools for MRI classification of Alzheimer's disease using 3D CNN networks

AlexanderFrotscher/ANDi

Codebase for Unsupervised Anomaly Detection using Aggregated Normative Diffusion (ANDi)

ChristianGaser/tfce

Threshold-free cluster enhancement toolbox for Matlab

NeuroSainteAnne/synthFLAIR

Synthetic FLAIR generation software

EmanuelAlogna/Brain-MRI-generation-using-GANs

Generation missing MRI using GANs - master thesis from Politechnic of Milan

kaledhoshme123/VAE-CycleGAN-MRI-CT-Scan-Images

The study works on generating CT images from MRI images, where unsupervised learning was used using VAE-CycleGan. Since the number of samples included in the data set used in the study, and therefore in this case we are in a state of epistemic uncertainty, therefore probabilistic models were used in forming the latent space.

volBrain/DeeplesionBrain

TUDelftHao/4DLongitudinal-MRI-Segmentation-Network

This is my Master thesis work at TU Delft, to longitudinally segment the MRI brain image series by 4D network.

dumitrux/navigate-MRI-with-3Dmouse

It displays MRI in 2D and 3D multi-slice views, with easy search and navigation with a 3D mouse.

MadheshRajS/MRI-reconstruction-using-Densely-Connected-Residual-DCR-block

Convolutional Neural Network(CNN) with Densely Connected Residual(DCR) block is built. U-Net with Densely Connected Residual(DCR) block is built. High quality reconstructed images with less noise and superior visual quality is produced

Medical-Image-Analysis-Laboratory/FaBiAN

FaBiAN is the first Fetal Brain magnetic resonance Acquisition Numerical phantom that simulates realistic T2-weighted magnetic resonance images of the developing fetal brain throughout gestation. It is open source and supports reproducibility studies to improve fetal brain diagnosis.

ubmagh/KMeans_mri_MapReduce

Implementation of Kmeans algorithme on brain MRI, in a parallel manner with MapReduce

Adl1coder/ImageProcessingExercises

image processing exercises with google colab

high-dimensional/biobank-megamodeller

This is a repository hosting all code and models detailed in the article Computational limits to the legibility of the human brain.

jc-cp/mri_preprocessing

This repository aims to present a general, customazible pipeline for MRI images based on a single configuration file (in .json format) that has different flags and according to them, a certain pre-processing procedure with desired steps is performed.

MRI-NOBEL/Perfusion-NOBEL

Pre-clinical DSC-MRI perfusion map generator written in Python