network-inference

There are 52 repositories under network-inference topic.

  • scTarNet

    Language:R3

  • nichenetr

    NicheNet: predict active ligand-target links between interacting cells

    Language:R452

  • dictys

    Context specific and dynamic gene regulatory network reconstruction and analysis

    Language:Python102

  • netdev

    Cross-platform library for network interface and gateway. Written in Rust.

    Language:Rust64

  • PLNmodels

    A collection of Poisson lognormal models for multivariate count data analysis

    Language:R53

  • core_periphery_sbm

    Bayesian network models for inferring core-periphery structure

    Language:Python34

  • GGLasso

    A Python package for General Graphical Lasso computation

    Language:Python30

  • regain

    REGAIN (Regularised Graphical Inference)

    Language:Jupyter Notebook28

  • ARNI

    Algorithm for Revealing Network Interactions (ARNI) from nonlinear collective dynamics

    Language:HTML25

  • findr

    Fast Inference of Networks from Directed Regulations

    Language:C21

  • BayesNetBP

    R package for inference in Bayesian networks.

    Language:R19

  • java-selenium-intercept-network

    A sample repo to help you intercept network with Selenium Java on LambdaTest cloud. Run your Java Selenium tests on LambdaTest platform.

    Language:Java18

  • fusenet

    Network inference by fusing data from diverse distributions

    Language:Python14
  • DIANE

    DIANE

    Dashboard for the Inference and Analysis of Networks from Expression data

    Language:R13

  • cybersecurity-networking

    An ongoing curated collection of awesome software, libraries, frameworks, talks & videos, best practices, learning tutorials and important practical resources about networking in cybersecurity

    Language:Python10

  • kimono

    KiMONo is a network inference tool for multi-omics datasets. The multi-omics network is calculated by sparse-group-LASSO regression and can incorporate prior biological information using protein-protein Interactions.

    Language:R10

  • SINCERITIES

    SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression profiles.

    10

  • hashing-based-network-discovery

    Hashing-based network discovery from time series

    Language:Python8

  • GrangerCausality

    MATLAB module for assessing the causal links between time series

    Language:MATLAB6

  • owl-nets

    Transforming OWL for statistical learning

    Language:Python5

  • constrained-em

    A constrained expectation-maximization algorithm for feasible graph inference.

    Language:Jupyter Notebook4

  • network-analysis

    Social Network Analysis and STEM Education is designed to prepare researchers to apply network analysis in order to better understand and improve teaching and learning.

    Language:HTML4

  • time-varying-graphical-lasso-impl

    Implementation of time-varying graphical lasso from research paper (2019)

    Language:Jupyter Notebook4

  • Network-Reconstruction

    Effect of hidden nodes on the reconstruction of bidirectional networks

    Language:Python4

  • merlin-p

    A prior-based integrative framework for functional transcriptional regulatory network inference (Fotuhi Siahpirani & Roy, Nucleic Acids Research 2017)

    Language:C4

  • MSc_Bioinfo-Network_Inference

    Network inference for gene expression using gradient matching. Final research project as part of the MSc in Bioinformatics and Theorectical Systems Biology at Imperial College London 2016/2017.

    Language:Julia4

  • red

    Inference of Epistatic Gene Networks

    Language:Python3

  • PBI

    The code of the paper "Pairwise-interactions-based Bayesian Inference of Network Structure from Cascades"

    Language:Python2

  • Connectivity_from_event_timing_patterns

    Model-free method for inferring synaptic interactions from spike train recordings.

    Language:Python2

  • IdentiFlow

    Identifiability and experimental design in perturbation studies

    Language:Python2

  • ESL

    Network inference via Event Space Linearization (ESL)

    Language:Python2

  • netbenchmark

    This package implements a benchmarking of several gene network inference algorithms from gene expression data

    Language:R2

  • mrtle

    Multi-species regulatory network learning (Koch et al, Cell Systems 2017)

    Language:C2

  • merlin

    Regulatory network inference with module prior

    Language:C2

  • FASTEN

    FASTEN: the software to influence multiple diffusion networks using the first-hand sharing pattern.

    Language:C++2

  • multiSight

    :bar_chart: :clipboard: Bioconductor R package with Graphical Interface to handle multi-omic data by Classification, Enrichment and Network inference.

    Language:R1