network-inference
There are 52 repositories under network-inference topic.
msc_thesis
Learning relational models from networked data on the web
TRaCE
Transitive Reduction and Closure Ensemble
integrative_networks
Code for Chasman et al, PLOS Comp Biol 2016.
MERLIN-VIZ
A visualization toolset for MERLIN Networks. Allows for direct user interaction.
PLNnetwork-workflow
Infer network from count data within Snakemake using a sparse Poisson lognormal model (PLNnetwork)
regain-applications
Containers for notebooks and data where REGAIN has been used.
response-logic
A network inference method based on a simple response logic with minimal presumptions
bggm
Code used for the manuscript 'Network reconstruction for trans acting genetic loci using multi-omics data and prior information' by Hawe et al., 2022 in Genome Medicine
Functional-network-construction-from-fMRI-signals
Construction of functional network from fMRI tasked-based data
REDUCE
REDUCE is an algorithm for optimal design of gene knock-out (KO) for the purpose of gene regulatory network (GRN) inference.
pyPCalg
Python wrapper of the PC++ skeleton function