otu

There are 10 repositories under otu topic.

  • Russel88/DAtest

    Compare different differential abundance and expression methods

    Language:R508239

  • Grice-Lab/HmmUFOtu

    An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing

    Language:C++116129

  • Arkadiy-Garber/Taxonsluice

    Reference-based, heuristic algorithm for identification of potential contaminants in mothur-formatted OTU tables

    Language:Python2101

  • lentendu/NetworkNullHPC

    OTU co-occurrence network inferrence base on null model for HPC

    Language:Shell22244

  • Amarilli/belly-button-challenge

    Building an interactive dashboard to explore the Belly Button Biodiversity dataset using JavaScript, D3, Plotly, HTML and CSS.

    Language:JavaScript1100

  • scott-rdl/OTU-table-to-KRONA-pie

    This bash script is used to generate a one page KRONA html from a rarified multi samples OTU table.

    Language:Shell1200

  • mruehlemann/phaat

    PAAT uses phylogenetic trees to refine differential abundance signals

    Language:R0100

  • Sam-Koehler/USDA-ARS-fusarium-community

    R workflows used to analyze microbial community sequence data

    Language:R0200

  • zadyson/OTUStalker

    OTUStalker is a small software tool designed to be compatible with QIIME (v1.8.0). Its purpose is to retrieve data pertinent to a single taxonomic group, from a larger (presumably mixed) data set, therefore allowing the user to concentrate their efforts on the specific taxa of interest. In effect, OTUStalker is taking the place of a targeted PCR primer set. OTUStalker requires a number of output files generated by QIIME (v1.8.0), and creates new files allowing re-analysis of the data set using QIIME.

    Language:Java0200

  • stuartnankai/MasterThesis

    Language:Python30