lentendu/NetworkNullHPC

Issues

• choosing null model using options from permatful in vegan

  #25 opened a year ago by timz0605
  1

• OTU Table Read Abundance vs. Present/Absent Data

  #21 opened a year ago by timz0605
  6

• -m columns option not working, Error in match.arg

  #24 opened a year ago by timz0605
  1

• graph.data.frame() was deprecated in igraph 2.0.0.

  #23 opened a year ago by timz0605
  0

• hdf5r vs. rhdf5

  #22 opened a year ago by timz0605
  1

• Allow fine tuning of memory and CPU request

  #20 opened 4 years ago by lentendu
  0

• Avoid nodelist option for non-array jobs

  #19 opened 4 years ago by lentendu
  0

• Add clr transformation

  #17 opened 5 years ago by lentendu
  0

• Any possibilities to support qsub?

  #16 opened 5 years ago by jianshu93
  4

• Add SLURM partition name option -p

  #15 opened 5 years ago by lentendu
  0

• Add an option to control the threshold of percent total OTUs included in the largest connected component from randomly permuted matrices

  #14 opened 5 years ago by lentendu
  0

• Option -m not correctly set in case

  #13 opened 5 years ago by lentendu
  0

• Null model 1 transpose the randomize matrix

  #12 opened 5 years ago by lentendu
  0

• Fix Slurm job names

  #11 opened 5 years ago by lentendu
  0

• Change OTU matrix cleaning order

  #10 opened 5 years ago by lentendu
  0

• Add an option to control hdf5 storage chunk size

  #9 opened 5 years ago by lentendu
  0

• Adapt requested time and memory to data size for threshold, edges and network steps

  #6 opened 5 years ago by lentendu
  0

• Add an option to select the type of OTU matrix normalization

  #8 opened 5 years ago by lentendu
  0

• Implements Grid Engine batch-queueing system

  #1 opened 5 years ago by lentendu
  0

• Avoid error if co-occurrence or co-exclusion network are empty, just report

  #7 opened 5 years ago by lentendu
  1

• Integrate environmental matrix to observed correlations

  #3 opened 7 years ago by lentendu
  0

• Group spearman bootstraps for small matrices

  #2 opened 7 years ago by lentendu
  0

• Include the median correlation value as third column in the edge list outputs

  #4 opened 7 years ago by lentendu
  0