polygenic-scores

There are 12 repositories under polygenic-scores topic.

privefl/bigsnpr
R package for the analysis of massive SNP arrays.
Language:R186 8 47644
PGScatalog/pgsc_calc
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
Language:Nextflow107 11 18520
mpinese/nimpress
Polygenic score calculation from VCF in Nim.
Language:Nim15 5 73
maialab/quincunx
quincunx: an R package to query, download and wrangle PGS Catalog data
Language:R14 2 21
intervene-EU-H2020/synthetic_data
Software program for generating synthetic datasets for genotypes and phenotypes
Language:Jupyter Notebook13 3 63
swvanderlaan/PGSToolKit
A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.
Language:Shell13 5 03
PGScatalog/PGS_Catalog
An open database of polygenic scores and relevant metadata needed to apply and evaluate them correctly.
Language:Python9 4 795
omerwe/MKLMM
Multi Kernel Linear Mixed Models for Complex Phenotype Prediction
Language:Python8 2 15
PGScatalog/pygscatalog
Python applications and libraries for working with PGS data and the PGS Catalog
Language:Python5 5 171
ramiromagno/quincunx
quincunx: an R package to query, download and wrangle PGS Catalog data
Language:R5 1 10
PGScatalog/pgscatalog_utils
(superseded by pygscatalog) Utilities for working with PGS Catalog API and scoring files
Language:Python4 3 353
fsakhtari/PRS
Polygenic Risk Scores (PRS) pipeline.
Language:R0 1 00