PGScatalog/PGS_Catalog

Issues

• Import GWAS Catalog Cohort information

  #381 opened 2 months ago by smlmbrt
  0

• Add changelog to scoring files

  #393 opened 3 months ago by fyvon
  1

• INDEL harmonized coordinate inconsistency

  #388 opened 4 months ago by alkaZeltser
  2

• Suggestion to update colour classes for ancestries

  #387 opened 4 months ago by ens-lgil
  0

• Harmonized files for PGS002759 contain information from another score?

  #386 opened 4 months ago by smlmbrt
  3

• Scores with negative correlations/directions

  #385 opened 5 months ago by DarioS
  2

• Storage of Redundant Scores

  #382 opened 5 months ago by DarioS
  1

• Missing new trait in /releases table

  #384 opened 5 months ago by fyvon
  0

• Test sites are getting indexed in google

  #373 opened 7 months ago by smlmbrt
  0

• Add new preprint citation to the website

  #370 opened 7 months ago by smlmbrt
  0

• Search by SNP Not Available

  #366 opened 8 months ago by DarioS
  1

• Add scores evaluated on the sample on Sample Set page

  #365 opened 8 months ago by fyvon
  0

• Make the list of eligible publications visible

  #364 opened 8 months ago by ens-lgil
  0

• Ancestries filters not working together with "show european" or "only multi-ancestry"

  #358 opened 9 months ago by fyvon
  0

• Curation: Show lifted embargos in ready-for-release table

  #349 opened 9 months ago by fyvon
  0

• Potential duplicated study names in Curation Tracker from the same Litsuggest import

  #348 opened 9 months ago by fyvon
  0

• Improve import_studies error reporting

  #352 opened 9 months ago by fyvon
  0

• New traits count discrepancy

  #350 opened 9 months ago by fyvon
  0

• Update effect/other_allele scoring file schema

  #345 opened 9 months ago by fyvon
  0

• Replacement for the "Browse Scores" page

  #288 opened 9 months ago by ens-lgil
  0

• Add new traits to release dashboard

  #336 opened 10 months ago by fyvon
  1

• Filter scores by minimum number of variants rather than exact number

  #343 opened 10 months ago by fyvon
  0

• Add link to EBI data preservation in footer

  #340 opened 10 months ago by fyvon
  0

• Improving the reported trait QC during import

  #333 opened 10 months ago by fyvon
  0

• Ref genome validator: Add support for indels

  #337 opened 10 months ago by fyvon
  0

• Making curation tracker curation_status read-only

  #317 opened a year ago by fyvon
  0

• Remove windows carriage returns from scoring files during import

  #334 opened 10 months ago by fyvon
  1

• QC of the variant positions and reported traits during import

  #332 opened 10 months ago by fyvon
  0

• Curation tracker

  #257 opened a year ago by smlmbrt
  2

• Update validator and doc to allow scoring files without effect_weight column but with dosage_#_weight column

  #323 opened a year ago by ens-lgil
  0

• Incorrect Categorisation

  #294 opened a year ago by DarioS
  2

• Handle user permissions for file imports

  #315 opened a year ago by fyvon
  0

• Reducing memory usage by not using pandas in litsuggest import

  #312 opened a year ago by fyvon
  0

• Litsuggest duplicate entries

  #314 opened a year ago by fyvon
  0

• Curation Tracker: update curation_status for new entries

  #307 opened a year ago by ens-lgil
  0

• Draft automated data request e-mail

  #311 opened a year ago by smlmbrt
  1

• New Web Display

  #306 opened a year ago by ens-lgil
  0

• New overall web display

  #287 opened a year ago by ens-lgil
  0

• Uploader of Risk Score is Unclear

  #291 opened a year ago by DarioS
  2

• Add link to validator on curation admin?

  #289 opened a year ago by smlmbrt
  1

• What are "Covariates Included in the Model?"

  #277 opened a year ago by Fiwx
  1

• Cleanup Reported Traits

  #265 opened 2 years ago by ens-lgil
  0

• Tracking GCSTs that need updating/merging

  #256 opened 2 years ago by smlmbrt
  0

• Replace EFOTrait_Base variable type for synonyms and mapped_terms

  #263 opened 2 years ago by ens-lgil
  0

• Discussion: scoring file formats

  #254 opened 2 years ago by smlmbrt
  0

• Expose release dates

  #251 opened 2 years ago by smlmbrt
  0

• Additional variant information

  #247 opened 2 years ago by smlmbrt
  0

• Potential bug with annotation trait URI : Ischemic stroke

  #249 opened 2 years ago by spiros
  3

• multiple effect and reference allele definitions in PGS001405

  #221 opened 3 years ago by kaurao
  1

• 500 Internal Server Error with `https://www.pgscatalog.org/rest/score/search?pmid=PGP000003&format=json`

  #213 opened 3 years ago by ramiromagno
  1