ppi-networks

There are 18 repositories under ppi-networks topic.

  • graphein

    a-r-j/graphein

    Protein Graph Library

    Language:Jupyter Notebook1k19154130

  • LirongWu/MAPE-PPI

    Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"

    Language:Python2452943

  • pulimeng/CancerOmicsNet

    A Graph Neural Network Model for prediction of the effectiveness of a drug on a given cancer cell lines

    Language:Python16314

  • chao1224/SGNN-EBM

    Structured Multi-task Learning for Molecular Property Prediction, AISTATS'22 (https://proceedings.mlr.press/v151/liu22e.html)

    Language:Python13220

  • pievos101/Ensemble-GNN

    Ensemble learning with graph neural networks for disease module discovery and classification

    Language:Python11401

  • paulmorio/protclus

    Python 3 library implementing a number of topological clustering techniques used on protein-protein interaction networks.

    Language:Python9403

  • THinnerichs/DTI-VOODOO

    A PPI network driven approach to drug-target-interaction prediction using deep graph learning methods.

    Language:TeX9332

  • ylaboratory/ETNA

    Embeddings to Network Alignment - align biological networks between two species

    Language:Python9204

  • SaniyaKhullar/NetREm

    Network Regression Embeddings reveal cell-type Transcription Factor coordination for target gene (TG) regulation

    Language:Jupyter Notebook3221

  • Barabasi-Lab/NonCoding

    Codes for the paper entitled: Non-Coding RNAs Improve the Predictive Power of Network Medicine

    Language:HTML2300

  • aGalhoz/wppi

    Gene prioritisation tool using a weighted network methodology based on Gene Ontology and Human Phenotype Ontology annotations to infer closely related genes to given genes of interest.

    Language:R1220

  • giuliapalmaa/PPI-Networks-Clustering

    New implementation of the Girvan-Newman edge-betweenness' algorithm and study of the clustering structure through modularity. Based on "A MapReduce-Based Parallel Clustering Algorithm for Large Protein-Protein Interaction Networks", by Liu and others

    Language:Java1101

  • pulimeng/Biology-Network-Reduction

    Graph representation for system biology networks and the reduction of them for machine learning purposes

    Language:Python1201

  • sevmardi/Protein-Protein-Networks

    Evaluate a strategy for predicting cancer-related proteins in PPI networks.

    Language:Python1204

  • ylaboratory/splitpea

    A tool for calculating PPI network rewiring due to alternative splicing

    Language:Jupyter Notebook1201

  • darwinsorchid/Biological-Networks

    [R] Generating Protein-Protein Interaction Networks using R and Quarto publishing system in HTML format.

    Language:HTML0100

  • MateJozsaPhys/CNDinvestigation

    Opportunities and challenges in partitioning the graph measure space of real-world networks

    Language:Jupyter Notebook0100

  • sysbiolux/MD_network_map

    Language:Python60