sars-cov-2-variants
There are 21 repositories under sars-cov-2-variants topic.
neherlab/SARS-CoV-2_variant-reports
Informal summaries of notable SARS-CoV-2 lineages
sars-cov-2-variants/lineage-proposals
Repository to propose and discuss lineages
broadinstitute/bvas
bvas: bayesian viral allele selection
3dgiordano/SARS-CoV-2-Variants
This project tries to give a glimpse of the different variants of SAR-CoV-2 in the world.
nextstrain/forecasts-ncov
SARS-CoV-2 variant growth rates and frequency forecasts
CovSeqCH/SequencingStats_and_Variants
Download raw data and turn it into useful dataset
DEIB-GECO/VariantHunter
VariantHunter is a tool for fast detection of emerging SARS-CoV-2 variants. It's an highly flexible and user friendly application for the systematic monitoring of the evolution of SARS-CoV-2 both at global and regional level.
GiancarloCroce/DCA_SARS-CoV-2
Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes
neherlab/BA286
BA.2.86 project with Sigal lab
neherlab/spike-only
Spike-only SARS-CoV-2 Nextstrain build
bulovka/sars-cov-2-mutation-reports
Datové sady mutací viru Sars-Cov-2 zjištěných Diskriminačními RT-PCR testy v ČR a to převážně z laboratoří ve FNB.
corneliusroemer/rki-abwasser-reports
Easy to view version of RKI SARS-CoV-2 wastewater surveillance reports
gencorefacility/MAD
Minor Allele Detection Pipeline for SARS-CoV2
sequence-review/sars-cov-2
Repository to discuss SARS-CoV-2 sequence quality
charlesfoster/deletion_detector
A simple program that uses parallel processing to detect deletions in fasta files relative to a reference genome.
deevvan/Observations-of-COVID-19-vaccine-coverage-and-hesitancy
Git Repository for Observations of COVID-19 vaccine coverage and vaccine hesitancy on COVID-19 outbreak: An American ecological study
InstitutoTodosPelaSaude/respat_snakemake
Pipeline for analyses of multiple pathogens, like SARS-CoV-2 with positivity rate analyses
PRO-OC/stats-mutations-and-lineages
Zobrazuje data pocházející z období 1.9.2021 - 8.2.2022 z VFN a FNB (Delta podzim a Omikron počátek roku). Data obsahují detekované mutace diskriminačními PCR testy, jejich rozložení v čase a srovnání s celogenomově sekvenovanými vzorky ze stejného období co se týče pohlaví.
MDU-PHL/covid-venn
Shiny app for creating Venn diagrams of SARS-CoV-2 variant/lineage mutations.
PRO-OC/pro-oc-mutation-finder
Rozšíření do prohlížeče obsahující automatický skript vypisující všechny odhalené mutace.
PRO-OC/pro-oc-mutation-finder-vfn-reports
Datové sady mutací viru Sars-Cov-2 zjištěných Diskriminačními RT-PCR testy v ČR a to převážně z laboratoří ve VFN.