statistical-genetics
There are 56 repositories under statistical-genetics topic.
xuranw/MuSiC
Multi-subject Single Cell Deconvolution
sgkit-dev/sgkit
Scalable genetics toolkit
JonJala/mtag
Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
xihaoli/STAAR
An R package for performing STAAR procedure in whole-genome sequencing studies
omerwe/polyfun
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
neurogenomics/MAGMA_Celltyping
Find causal cell-types underlying complex trait genetics
xihaoli/STAARpipeline
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
n-mounier/bGWAS
R package to perform Bayesian Genome-Wide Association Studies
sinarueeger/statistical-genetics-resources
Resources (software, data, research article) in the field of statistical genetics
RayDebashree/PLACO
A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
xihaoli/STAARpipeline-Tutorial
The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
xihaoli/MetaSTAAR
An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
bogdanlab/RHOGE
Estimate genetic correlation using predicted expression
gc5k/GEAR
GEAR [GEnetic Analysis Repository], contact chenguobo@gmail.com;
RayDebashree/metaUSAT
metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using univariate GWAS summary statistics.
omerwe/S-PCGC
Heritability, genetic correlation and functional enrichment estimation for case-control studies
aprilweilab/grgl
Genotype Representation Graph Library
xihaoli/STAARpipelineSummary
An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
alexfreudenberg/miraculix
Efficient algebraic functions for statistical analysis of genomic data
omerwe/MKLMM
Multi Kernel Linear Mixed Models for Complex Phenotype Prediction
rlangefe/pygemma
A Python/R package for fitting linear mixed models for genome-wide association studies among related individuals
sens/FaSTLMM.jl
Julia implementation of Factored Spectrally Transformed Linear Mixed Models
jackmwolf/pcsstools
Tools for regression using pre-computed summary statistics
mauriceling/bactome
Toolbox for Studying Bacteria, Archaea, and Complex Taxons
li-lab-genetics/staarpipeline-rap
An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP
RayDebashree/mvtests
mvtests: a suite of functions for testing genetic associations of multiple traits (a.k.a. cross-phenotype associations)
xihaoli/MultiSTAAR
An R package for performing MultiSTAAR procedure in whole-genome sequencing studies
hms-dbmi/RaMeDiES
Statistical models for finding de novo recurrence and compound heterozygosity across rare disease patient cohorts
hruffieux/mQTL_analysis_example
Replication of an mQTL analysis using the ``locus'' method on simulated data
omerwe/MALAX
Association testing of bisulfite sequencing methylation data via a Laplace approximation
asthmacollaboratory/sage-geuvadis-predixcan
Analysis of transcriptome imputation using paired genotype-expression data from SAGE and GEUVADIS
bschilder/ThreeWayTest
Summary statistics-based association test for identifying the pleiotropic effects with set of genetic variants
christacaggiano/treeWas-exploration
exploration of TreeWas/TreeWas2 code for the Zaitlen lab. Based on TreeWas developed by McVean Lab @ Oxford.
li-lab-genetics/staarpipelinesummary_indvar-rap
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
li-lab-genetics/staarpipelinesummary_varset-rap
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
rborder/xftsim
eXtensible Forward Time SIMulator for complex phenogenetic architectures