transmart
There are 32 repositories under transmart topic.
thehyve/glowing-bear
:bear: The open source cohort selection and analysis interface
thehyve/transmart-core
Core components and documentation of the tranSMART platform. https://i2b2transmart.org/
thehyve/transmart-batch
tranSMART pipeline alternative to ETL, using Spring Batch
thehyve/glowing-bear-docker
Docker scripts for Glowing Bear
thehyve/tmtk
tranSMART Arborist ETL toolkit
thehyve/transmart-api-client-py
🐍 Python client for tranSMART Glowing Bear
tranSMART-Foundation/transmart-core
Core components and documentation of the tranSMART platform.
thehyve/arborist
TranSMART Arborist: Graphical tool for reshaping your data for the tranSMART data warehouse.
thehyve/python_csr2transmart
Scripts for converting CSR data to TranSMART
thehyve/python_transmart_loader
TranSMART loader library for Python
thehyve/transmart-api-training
Data science with tranSMART REST API in Python and R
thehyve/transmart-hyper-dicer
Export a subset of data from a TranSMART instance based on a query, and upload them to a different (empty) TranSMART instance using transmart-copy. Short for TranSMART hypercube dicer.
thehyve/data-showcase
A data showcase for displaying a summary of data in TranSMART.
thehyve/gb-backend
Backend application for Glowing Bear UI, supporting user queries management, subscription and notification functionality
thehyve/pmc-conversion
Data extraction, transformation and loading pipeline for the Princess Maxima Center
thehyve/puppet-transmart_core
Puppet module for TranSMART
thehyve/python_claml2transmart
ClaML ontology to TranSMART loader
thehyve/transmart-android
Android Client for TranSMART
ivanov-vision/tranSMART---Vagrant
tranSMART-Vagrant Ubuntu 14.04
JannikNickel/MTT
ETL process for transforming the MIMIC-III dataset into the required format for tranSMART-batch by using high dimensional data types to store time series data.
thehyve/glowing-bear-site
Github pages for Glowing Bear website
thehyve/puppet-glowing_bear
Puppet module for Glowing Bear
thehyve/python_fhir2transmart
FHIR to TranSMART loader
thehyve/python_ontology2transmart
Example ontology to TranSMART loader
thehyve/transmart-lib
TranSMART API client library and proxy
thehyve/transmart-packer
data jobs for transmart
thehyve/transmart-variant-store-connector
Variant store connector for the TranSMART API
JannikNickel/tranSMART-timeseries-demo
Demonstration of a docker based tranSMART installation with time series visualization support in SmartR by loading time series data from the MIMIC-III dataset into high dimensional variables.
Lundbeck-Biometrics/tranSMART-admin
Repo for sharing tranSMART admin tasks, such as config info and troubleshooting scripts
thehyve/workshop-tuebingen2019
Materials for the Tübingen 2019 workshop for data loading and querying with Python