whole-genome-bisulfite-sequencing

There are 9 repositories under whole-genome-bisulfite-sequencing topic.

  • ben-laufer/DMRichR

    A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)

    Language:R4033823

  • ben-laufer/CpG_Me

    A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)

    Language:Shell202111

  • cemordaunt/comethyl

    An R package for weighted region comethylation network analysis

    Language:R8333

  • cemordaunt/DMRfinder

    A pipeline to identify differentially-methylated regions from whole-genome bisulfite sequencing data

    Language:R8124

  • ben-laufer/CGi

    Takes output from DMRichR and performs statistical testing and visualization for CpG and genic annotation enrichments

    Language:R5111

  • cemordaunt/WilsonDiseaseEpigenome

    Analysis scripts for identification and visualization of Wilson disease-associated DNA methylation changes in human liver and blood

    Language:R4100

  • ben-laufer/PCB-Placenta-and-Brain

    Analyses for the manuscript "Prenatal PCB exposure alters a shared neurodevelopmental DNA methylation profile in mouse placenta and fetal brain".

    Language:R1100

  • cemordaunt/AutismCordBloodMethylation

    Analysis of DNA methylation data by whole-genome bisulfite sequencing in umbilical cord blood from ASD and TD subjects in the MARBLES and EARLI studies

    Language:R0211

  • cemordaunt/WilsonDiseaseThioredoxin

    Analysis of DNA methylation and gene expression for thioredoxin system genes in Wilson disease

    Language:R0100