tpdmskim

tpdmskim's Stars

• HParklab/DENOISer

  Discriminator for Model Docking

  Language:Python4

• jwohlwend/boltz

  Official repository for the Boltz-1 biomolecular interaction model

  Language:Python1.5k165

• bytedance/Protenix

  A trainable PyTorch reproduction of AlphaFold 3.

  Language:Python78262

• clami66/AF_unmasked

  Source code and examples for AlphaFold Unmasked

  Language:Python467

• AlanTeoYueYang/PPI-Network-Analysis

  Protein-protein interaction network constructed with STRING database

  Language:Python21

• yasirs/BioGRID-Nets

  Data Munging for BioGRID data to form interaction networks for further processing.

  Language:Python31

• atommoyer/stapler

  A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins

  Language:Python174

• chaidiscovery/chai-lab

  Chai-1, SOTA model for biomolecular structure prediction

  Language:Python1.5k187

• Ligo-Biosciences/AlphaFold3

  Open source implementation of AlphaFold3

  Language:Python94283

• NVIDIA/NeMo

  A scalable generative AI framework built for researchers and developers working on Large Language Models, Multimodal, and Speech AI (Automatic Speech Recognition and Text-to-Speech)

  Language:Python12.5k2.6k

• pinder-org/pinder

  PINDER: The Protein INteraction Dataset and Evaluation Resource

  Language:Python977

• universvm/how_to_create_a_protein

  A short course on proteins and protein design aimed at early career students

  1446

• plinder-org/plinder

  Protein Ligand INteraction Dataset and Evaluation Resource

  Language:Python18711

• JudeWells/chainsaw

  Language:Python292

• yangkky/Machine-learning-for-proteins

  Listing of papers about machine learning for proteins.

  1.6k207

• openforcefield/protein-ligand-benchmark

  Protein-Ligand Benchmark Dataset for Free Energy Calculations

  Language:Python15615

• chao1224/Geom3D

  Geom3D: Geometric Modeling on 3D Structures, NeurIPS 2023

  Language:Python11613

• zjujdj/InteractionGraphNet

  InteractionGraphNet: a Novel and Efficient Deep Graph Representation Learning Framework for Accurate Protein-Ligand Interaction Prediction and Large-scale Structure-based Virtual Screening

  4410

• ogchen/nanofold

  A nano protein structure prediction model based on DeepMind's AlphaFold paper

  Language:Python241

• lucidrains/alphafold3-pytorch

  Implementation of Alphafold 3 from Google Deepmind in Pytorch

  Language:Python1.3k157

• psipred/Merizo

  Fast and accurate protein domain segmentation using Invariant Point Attention

  Language:Python276

• kyegomez/AlphaFold3

  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

  Language:Python762103

• BioinfoMachineLearning/ATOMRefine

  3D equivariant graph transformer for all-atom refinement of protein tertiary structures

  Language:Python256

• baker-laboratory/RoseTTAFold-All-Atom

  Language:Python667118

• Lightning-AI/pytorch-lightning

  Pretrain, finetune ANY AI model of ANY size on multiple GPUs, TPUs with zero code changes.

  Language:Python28.7k3.4k

• diff-usion/Awesome-Diffusion-Models

  A collection of resources and papers on Diffusion Models

  Language:HTML11.3k952

• zrqiao/NeuralPLexer

  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model

  Language:Jupyter Notebook27472

• uw-ipd/RoseTTAFold2

  Language:Python18038

• jasonkim8652/al_breakdown

  Language:Python7

• phbradley/TCRdock

  python tools for TCR:peptide-MHC modeling and analysis

  Language:Python6710