tpq/propr

Issues

• Interests about python implementation

  #43 opened 9 months ago by HelloWorldLTY
  6

• New vignettes

  #45 opened 7 months ago by SilasK
  2

• [fix] GREA is too slow, improve the code

  #44 opened 7 months ago by suzannejin
  0

• Question about differences between propr versions

  #23 opened 4 years ago by suzannejin
  6

• [Question] Understanding why CLR -> Correlation is not compositionally-valid

  #37 opened 2 years ago by jolespin
  1

• any option for robust or weighted metrics?

  #40 opened a year ago by rsiani
  2

• [Question] Revisiting Multi-omic Analysis

  #38 opened a year ago by mirpie
  0

• aldex.glm expects different input in propr vs aldex2 packages, leading to errors when both are loaded

  #35 opened 3 years ago by rrohwer
  0

• Question about implementing ALR with ERCC92 spike ins

  #34 opened 3 years ago by jolespin
  0

• Add partial correlations to propr

  #31 opened 3 years ago by danfulop
  14

• BUG REPORT lr2cor "r" column goes beyond (-1, 1)

  #33 opened 3 years ago by tpq
  0

• Question about when to use CLR or ILR

  #11 opened 5 years ago by jolespin
  15

• Question about using propr with multi-omics data

  #9 opened 5 years ago by handibles
  5

• Question about the propr `select` argument

  #30 opened 3 years ago by JemmaSun
  3

• `updateCutoffs.propr` speedup

  #27 opened 3 years ago by mooreryan
  2

• Question about significant proportionalities

  #25 opened 4 years ago by alopgar
  3

• Question about how FDR is calculated

  #10 opened 5 years ago by mooreryan
  2

• Error in propr(counts, metric = "rho", ...) : Data may not contain negative measurements.

  #26 opened 3 years ago by JemmaSun
  2

• Question about scaling propr to very large data sets (Part 2)

  #24 opened 4 years ago by sapuizait
  11

• feature request: allow specifying contrasts and p-value correction in posthoc()

  #8 opened 5 years ago by yanxianl
  0

• Question about lr2glm model.matrix argument

  #18 opened 4 years ago by MeggyC
  2

• Question about scaling propr to very large data sets (Part 1)

  #19 opened 4 years ago by suzannejin
  1

• Question about centered log-ratio transformation

  #22 opened 4 years ago by li000678
  2

• Question about dimension reduction for single-cell and other data

  #21 opened 4 years ago by SilasK
  3

• Meaning of lrv and interpreting negative rho values...

  #20 opened 4 years ago by lix2k3
  1

• Question about how to interpret rho and FDR

  #17 opened 4 years ago by taylorreiter
  2

• Question about why not to use negative rho

  #4 opened 6 years ago by maubarsom
  6

• Error in labRcpp(ncol(lr)) : negative length vectors are not allowed

  #13 opened 5 years ago by grayfall
  14

• Extracting connected components from `propr` objects

  #16 opened 4 years ago by grayfall
  2

• Error in labRcpp(ncol(lr)) : Index out of bounds

  #15 opened 5 years ago by grayfall
  1

• Error: posthoc reports finding negative measurements where there is none

  #12 opened 5 years ago by tormolle
  7

• Shrunken plots in vignettes

  #7 opened 5 years ago by adriaaula
  1

• Would it not be good to use dgCMatrix instead of a matrix in your class?

  #5 opened 5 years ago by stela2502
  1

• updateCutoffs fail when using theta_mod

  #2 opened 7 years ago by tpq
  1

• out-of-bounds theta_mod

  #3 opened 7 years ago by tpq
  1