Pinned Repositories
Contributions
Contribute Packages to Bioconductor
MouseAgingData
Mouse aging multi-omics project with Rubin Lab
ProteinGymR
Programmatic access to ProteinGym datasets in R/Bioconductor
AlphaMissenseR
Accessing AlphaMissense Data Resources in R
Chimpanzee
Population genetic analyses with Dr. Alexa Bracci in chimpanzees looking at replication timing evolution.
FSJ_Blood_metagenomics
Isolate and identify microbes within host whole-blood samples using the program Kraken2
Git-Backed-Content
This tutorial demonstrates how to deploy a Shiny app on Posit Connect servers with pins to write and read data on Posit Connect.
plot-PopGen-estimates
R scripts for visualizing popgen estimates of heterozygosity, inbreeding, and relatedness in a whole-genome dataset.
Whole-genome_variantCalling
Scalable pipeline for variant calling and quality filtering for short-read genomic sequences. This workflow follows the GATK Best Practices protocol and is implemented with a SLURM scheduler and can be adapted to other genomic datasets.
data-science-seminar
Topics In Data Science and Bioinformatics
tram-nguyen-n's Repositories
tram-nguyen-n/Whole-genome_variantCalling
Scalable pipeline for variant calling and quality filtering for short-read genomic sequences. This workflow follows the GATK Best Practices protocol and is implemented with a SLURM scheduler and can be adapted to other genomic datasets.
tram-nguyen-n/plot-PopGen-estimates
R scripts for visualizing popgen estimates of heterozygosity, inbreeding, and relatedness in a whole-genome dataset.
tram-nguyen-n/Chimpanzee
Population genetic analyses with Dr. Alexa Bracci in chimpanzees looking at replication timing evolution.
tram-nguyen-n/FSJ_Blood_metagenomics
Isolate and identify microbes within host whole-blood samples using the program Kraken2
tram-nguyen-n/Git-Backed-Content
This tutorial demonstrates how to deploy a Shiny app on Posit Connect servers with pins to write and read data on Posit Connect.