TranSMART Project

Open source translational data warehouse. Support: https://wiki.transmartfoundation.org/display/transmartwiki/Getting+Support

Pinned Repositories

i2b2_1.6_Postgres
Language:Java53
Rmodules
A R statistical analysis module plugin for tranSMART
Language:Groovy5 26 034
SmartR
SmartR
Language:JavaScript13 12 015
transmart-core-api
constraints
Language:Groovy1 28 08
transmart-core-db
TranSMART Core
Language:Groovy1 30 017
transmart-data
Tools for managing tranSMART's database
Language:PLSQL3 28 019
tranSMART-ETL
tranSMART ETL pipelines and configurations
Language:Groovy11 30 026
transmart-rest-api
HTTP available tranSMART RESTful API
Language:Groovy3 26 07
transmartApp
tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and phenotypic data, and assessing their analytical results in the context of published literature and other work.
Language:JavaScript71 36 074
transmartApp-DB
Database schema and database dumps for tranSMART application
Language:Perl88

TranSMART Project's Repositories

transmart/transmartApp
tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and phenotypic data, and assessing their analytical results in the context of published literature and other work.
Language:JavaScript71 36 074
transmart/SmartR
SmartR
Language:JavaScript13 12 015
transmart/tranSMART-ETL
tranSMART ETL pipelines and configurations
Language:Groovy11 30 026
transmart/Rmodules
A R statistical analysis module plugin for tranSMART
Language:Groovy5 26 034
transmart/RInterface
A R module with packaged functions to query the tranSMART database directly
Language:R4 25 29
transmart/transmartApp-Config
external configuration files for tranSMART application
Language:Groovy4 26 03
transmart/transmart-data
Tools for managing tranSMART's database
Language:PLSQL3 28 019
transmart/transmart-rest-api
HTTP available tranSMART RESTful API
Language:Groovy3 26 07
transmart/transmart-core-api
constraints
Language:Groovy1 28 08
transmart/transmart-core-db
TranSMART Core
Language:Groovy1 30 017
transmart/transmart-extensions
Elements that are being collected for refactoring but do not yet have a home. This project needs to be reviewed often!
Language:Java1 29 110
transmart/transmart-ICE
ICE tool for transmart ETL (formerly FCL4tranSMART)
Language:Java1 7 01
transmart/transmart-test
Functional tests for tranSMART
Language:Groovy1 11 04
transmart/transmart-base-ui
Boilerplate code for tranSMART UI
Language:JavaScript0 4 03
transmart/blend4j-plugin
blend4j-plugin is a grails plugin to access galaxy.
Language:Groovy20 04
transmart/dalliance-plugin
Language:JavaScript5 01
transmart/folder-management-plugin
The transmart (and grails) plugin that contains the folder-management elements.
Language:Groovy28 017
transmart/GWAVA
Genome Wide Association Study Visualizer (from Pfizer)
Language:HTML27 02
transmart/IpaApi
Language:Java5 01
transmart/mydas
mydas is an easy-to-extend Java DAS server framework.
Language:Java5 01
transmart/Scripts
A collection of scripts for managing all the tranSMART Foundation repositories
Language:Shell5 0
transmart/transmart-batch
tranSMART pipeline alternative to ETL, using Spring Batch
Language:Groovy5 02
transmart/transmart-gwas-plink
Plink integration for tranSMART
Language:Groovy5 01
transmart/transmart-gwas-plugin
The transmart (and grails) plugin that contains the GWAS elements.
Language:PLSQL28 014
transmart/transmart-horde
This contains code for a prototype of "federation"
Language:Groovy4 0
transmart/transmart-legacy-db
Contains the Grails domain declarations of the legacy transmart schema
Language:Groovy28 06
transmart/transmart-metacore-plugin
The tranSMART plugin Metacore
Language:Groovy27 06
transmart/transmart-mydas
Language:Java5 01
transmart/transmart-xnat-importer-plugin
Language:Groovy3 01
transmart/transmart-xnat-viewer
Connector to link tranSMART to an XNAT server
Language:Groovy5 16