tropicalberto
Bioinformatics PhD candidate at NKI | M.Sc. Bioinformatics and Systems Biology | Data Science background | Physics B.Sc. & Chemistry B.Sc.
Netherlands Cancer InstituteThe Netherlands
Pinned Repositories
2019-BSS
Introduction to statistics and machine learning for bioinformatics
Achilles
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
banking_expenses_report
Generates a small report of the banking expenses by category
bioinf_summer_school
Bioinformatics summer school @UCLouvain la Neuve, Belgium
BLCAsubtyping
Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie, TCGA
BreastCancerSpatialProteomics
deeplearning-biology
A list of deep learning implementations in biology
expedia_ranking_hotels
A hotel recommender system based on a Machine Learning and Data Mining approach
immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)
snp_continental_predictor
Machine Learning predictor of the continental origin using SNP data
tropicalberto's Repositories
tropicalberto/immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)
tropicalberto/2019-BSS
Introduction to statistics and machine learning for bioinformatics
tropicalberto/Achilles
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
tropicalberto/banking_expenses_report
Generates a small report of the banking expenses by category
tropicalberto/bioinf_summer_school
Bioinformatics summer school @UCLouvain la Neuve, Belgium
tropicalberto/BLCAsubtyping
Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie, TCGA
tropicalberto/BreastCancerSpatialProteomics
tropicalberto/deeplearning-biology
A list of deep learning implementations in biology
tropicalberto/expedia_ranking_hotels
A hotel recommender system based on a Machine Learning and Data Mining approach
tropicalberto/snp_continental_predictor
Machine Learning predictor of the continental origin using SNP data
tropicalberto/flexgsea-r
Flexible gene set enrichment analysis
tropicalberto/gcpworkshop
README to follow along with the GCP workshop from HMF
tropicalberto/GeomxTools
Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.
tropicalberto/GeoMxWorkflows
Workflows for analyzing data with the GeomxTools package and subsequent GeoMx related packages
tropicalberto/google_hash_code_qualification_2018
Repository for google hash code competition 2018 (qualification phase). https://hashcode.withgoogle.com/
tropicalberto/lintr
Static Code Analysis for R
tropicalberto/MGC-BioSB-SingleCellAnalysis2020
tropicalberto/minimal-fork.github.io
Minimal is a Jekyll theme for GitHub Pages
tropicalberto/mofa_training
MOFA training resources
tropicalberto/nabucco_spatial_manuscript
Code to reproduce the findings from the 'Spatial analysis paper NABUCCO'
tropicalberto/NanoStringNCTools
Tools for NanoString Technologies nCounter Technology for reading RCC files into an ExpressionSet derived object, QC and normalization.
tropicalberto/nextflow-workshop
Nextflow workshop materials 27 May 2021
tropicalberto/parseTCGAClinicalXML
a small python program for parsing TCGA clinical XMLs to CSV format
tropicalberto/spatstat.core
sub-package of spatstat containing core functionality for data analysis and modelling
tropicalberto/statistics_with_R
VU course 2017
tropicalberto/strelka
Strelka2 germline and somatic small variant caller
tropicalberto/TANDEM
:exclamation: This is a read-only mirror of the CRAN R package repository. TANDEM — A Two-Stage Approach to Maximize Interpretability of Drug Response Models Based on Multiple Molecular Data Types
tropicalberto/tropicalberto
Config files for my GitHub profile.
tropicalberto/tropicalberto.github.io
tropicalberto/TSEscore_ICIs
Calculate the TSE score to predict response to ICIs