tshmak/lassosum

Issues

• Regarding Lassosum download in Mac

  #50 opened 5 months ago by khujithrajueni
  0

• Error in group.blocks ?

  #49 opened 9 months ago by aikedan
  1

• Getting predicted phenotypes from validate()

  #48 opened 9 months ago by DracoLloigor
  1

• Model Performance R2

  #47 opened a year ago by m-mews
  1

• p2cor generating NaNs

  #35 opened 3 years ago by Fnyasimi
  8

• pseudovalidation double destandardize

  #46 opened 2 years ago by JasmRicard
  4

• pseudovalidate() with no LD

  #45 opened 2 years ago by euffelmann
  4

• lassosum-pipeline: Not converging

  #44 opened 2 years ago by YutingHan317
  2

• How to find SNPs with non-zero best used in final pgs?

  #42 opened 2 years ago by Mahantesh-Biradar
  2

• Error in splitvec.from.bfile(bfile) : length(pvec) == length(bfile) is not TRUE

  #43 opened 2 years ago by rainajia
  6

• Error in validate.lassosum.pipeline(out) : There's no variation in phenotype

  #41 opened 2 years ago by Mahantesh-Biradar
  2

• Error in `$<-.data.frame`(`*tmp*`, "ok123", value = TRUE) : replacement has 1 row, data has 0

  #40 opened 2 years ago by Mahantesh-Biradar
  14

• chromosomewise lassosum and pseudovalidate error

  #39 opened 2 years ago by jyjo43043
  3

• Lassosum benchmarking

  #38 opened 3 years ago by fmadani
  3

• target.res$best.pgs generating NaNs

  #37 opened 3 years ago by littleteacupscu
  11

• Is genotype matrix divided by sqrt(n) in lassosum?

  #36 opened 3 years ago by liupeng2117
  4

• how to use result of lassosum to plink

  #17 opened 5 years ago by biostat0903
  16

• No phenotype left. Perhaps the FID/IID do not match?

  #34 opened 3 years ago by hs2097
  0

• PRS from lassosum does not tally with PRS calculated manually

  #29 opened 4 years ago by wkhonottingham
  9

• Splitvalidation results in a bimodal distribution of PRSs

  #33 opened 4 years ago by JasmRicard
  1

• took too much time to run the pseudovalidate

  #32 opened 4 years ago by YINGJUNBIAO
  0

• Negative results

  #12 opened 6 years ago by privefl
  15

• Any documentation of pseudovalidate?

  #31 opened 4 years ago by YaoLei-Leo
  2

• About installing the package

  #30 opened 4 years ago by felixhu93
  2

• parseselect/lassosum.pipeline won't accept tibbles for keep/remove arguments

  #16 opened 4 years ago by mattwarkentin
  1

• --LDblocks options doesn't work for manually generated .bed file.

  #27 opened 4 years ago by raimondsre
  1

• Speed up lassosum

  #25 opened 4 years ago by dheerajbobbili1988
  2

• what is the format of the LDfile used in ?

  #26 opened 4 years ago by complexgenome
  4

• Support PLINK2 dosage format

  #18 opened 5 years ago by wavefancy
  2

• !any(is.na(cor)) is not TRUE

  #24 opened 4 years ago by maltose1117
  7

• Getting All the Same PRS in PRS.best

  #23 opened 4 years ago by HannahR1
  1

• How to use the "#" for multiple chromosome input

  #22 opened 4 years ago by HannahR1
  1

• Lassosum standalone error

  #21 opened 5 years ago by dheerajbobbili1988
  7

• Using pre-computed LD

  #19 opened 5 years ago by liangyy
  1

• p2cor() doesn't handle very small pvalues

  #11 opened 5 years ago by privefl
  3

• Output the reweighed beta?

  #8 opened 5 years ago by wavefancy
  8

• explain the "pgs" in out

  #13 opened 5 years ago by mjalbrzikowski
  3

• [enhancement] Can you please give more document for lassosum.pipeline

  #4 opened 7 years ago by wavefancy
  7

• Gaps and overlaps between LD regions of Berisa.XXX.hg38.bed files

  #9 opened 6 years ago by ilarsf
  3

• Using lassosum in Rscript

  #3 opened 7 years ago by choishingwan
  0

• the link to the .tar.gz does not work

  #2 opened 7 years ago by andgan
  4

• lassosum.pipeline.R has hardcoded paths

  #1 opened 7 years ago by gabraham
  1