This repository contains code used for the fly whole brain activity experiments and analysis.
Several files were contributed by Tongqiu Jia.
The file starting with A_ corresponds to the code used for the analysis in http://biorxiv.org/content/early/2015/12/10/033803
FIJIMacros folder includes Macro scripts for FIJI to process images. MatlabFiles folder has matlab scripts for each step of the analysis.
Summarize the pipeline
dFF_psf_KF_file A_ICAalaMelodic or A_AverageDifferencesMapsStimuli