Pinned Repositories
2p_acq_code
Code for 2P acquisition computer (DANA/Wombat)
aDN_behaviour
APT
Animal Part Tracker
Arduino
This is ArduCAM library for Arduino boards
awesome-ggplot2
A curated list of awesome ggplot2 tutorials, packages etc.
Blind-image-analysis
A simple package to blind images and quantify signal intensities
BRRR
Rap adlibs in R.
cbtrack
Simple Two-Fly Tracker for Courtship Bowls
chemetho
:ant: :movie_camera: Toolkit for analyzing chemo-ethology data
ColorMIP_Mask_Search
ColorMIP_Mask_Search plugin for Fiji
tsizemo2's Repositories
tsizemo2/2p_acq_code
Code for 2P acquisition computer (DANA/Wombat)
tsizemo2/aDN_behaviour
tsizemo2/APT
Animal Part Tracker
tsizemo2/Arduino
This is ArduCAM library for Arduino boards
tsizemo2/awesome-ggplot2
A curated list of awesome ggplot2 tutorials, packages etc.
tsizemo2/chemetho
:ant: :movie_camera: Toolkit for analyzing chemo-ethology data
tsizemo2/ColorMIP_Mask_Search
ColorMIP_Mask_Search plugin for Fiji
tsizemo2/EXTRACT-public
EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time series from both one-photon and two-photon calcium imaging movies.
tsizemo2/fly2p
small package with utility functions for analyzing (fly) calcium imaging data
tsizemo2/FlyCaImAn
Calcium Imaging Processing Pipeline of 3D time series
tsizemo2/flydra
live, low-latency markerless multi-camera 3D animal tracking system
tsizemo2/FlyLFM
This repository contains code used for the fly brain activity experiments
tsizemo2/FlyTracker
tsizemo2/goodwin-lab-tracking
Pipline for processing and tracking courtship videos
tsizemo2/Grabe_invivo_AL_atlas
tsizemo2/hemibrainr
Code for working with data from Janelia FlyEM's hemibrain project
tsizemo2/JAABA
Janelia Animal Behavior Detector
tsizemo2/MATLAB_DAQmx_examples
DAQmx Examples using MATLAB
tsizemo2/miniPID_flow_sensor
:ocean: :postal_horn: A device for measuring the flow rate of the miniPID photo-ionization detector
tsizemo2/MultiCamSelfCal
multiple camera self calibration Toolbox
tsizemo2/NeuroMatic
NeuroMatic
tsizemo2/panels-matlab
Matlab code to interface with the Reiser Panels system
tsizemo2/R.matlab
R package: R.matlab
tsizemo2/roipoly.py
Select a polygonal region of interest (ROI) with python and matplotlib, similar to the roipoly.m function from MATLAB.
tsizemo2/scanimage-functions
User functions for customizing ScanImage
tsizemo2/Sizemoreetal2023
This repository contains code used to analyze and plot the data in Sizemore et al., 2023 (https://doi.org/10.1038/s41467-023-41012-3).
tsizemo2/training
Repository for training notebooks
tsizemo2/treestoolbox
TREES toolbox
tsizemo2/triggerbox
camera triggering for synchronized multi-camera setups
tsizemo2/Zolin_etal_2021
Repository for data related to Zolin et al.