Pinned Repositories
bioinfosummer
Tutorial for AMSI BioInfoSummer 2018
checkin
iONMF
Integrative orthogonal non-negative matrix factorization
kallisto
Near-optimal RNA-Seq quantification
m6AMethylation
m(6)A methylation analysis
NGS-analysis
二代测序数据分析
scKB
Use kallisto and bustools to call the gene-cell matrix for both spliced and unspliced transcripts of scRNA-seq
ViennaRNA
The ViennaRNA Package
tsjzz's Repositories
tsjzz/kallisto
Near-optimal RNA-Seq quantification
tsjzz/NGS-analysis
二代测序数据分析
tsjzz/ViennaRNA
The ViennaRNA Package
tsjzz/checkin
tsjzz/ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
tsjzz/chip-seq-pipeline2
ENCODE ChIP-seq pipeline
tsjzz/ChIPseeker
:dart: ChIP peak Annotation, Comparison and Visualization
tsjzz/circlize
Circular visualization in R
tsjzz/clash
A rule-based tunnel in Go.
tsjzz/COPILOT
Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced counts matrices produced by scKB pipeline as the input of copilot.
tsjzz/dask-tutorial
Dask tutorial
tsjzz/DellaChiara_et_al_2021
tsjzz/EpiNano
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads
tsjzz/exomePeak2
Bias aware peak calling and quantification for MeRIP-Seq
tsjzz/genomepy
genes and genomes at your fingertips
tsjzz/Intro-to-rnaseq-hpc-O2
This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
tsjzz/Johnyazz
data analysis
tsjzz/MACS
MACS -- Model-based Analysis of ChIP-Seq
tsjzz/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
tsjzz/nanopolish
Signal-level algorithms for MinION data
tsjzz/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
tsjzz/RADAR
The project for analyzing differential methylation of MeRIP-seq data
tsjzz/rerio
Research release basecalling models and configurations
tsjzz/Roddy
The Roddy workflow development and management system.
tsjzz/SchwartzLab_ToolBox
A set of programs, and scripts that make our life easier analyzing biological data. Python, R and more progLangs
tsjzz/scRNA.seq.course
Analysis of single cell RNA-seq data course
tsjzz/seurat
R toolkit for single cell genomics
tsjzz/STAR
RNA-seq aligner
tsjzz/Training-modules
Materials for short, half-day workshops
tsjzz/zhang_nature_2021