/zhang_nature_2021

Primary LanguageR

zhang_nature_2021

Code used to produce figures in PMID

Dependencies

  1. bwtool
  2. bedtools
  3. R libraries

Figure 1

  1. 190909_melanoma_salmon_git.R

Figure 3

  1. 210522_yummer_TE_git.R

Figure 4

  1. 210520_signal_correlation_git.R
  2. 210518_overlaps_H3K9me3_KDM5B_SETDB1_git.R
  3. 210513_atac_diffbind_sizefactors_git.R

Figure eF1

  1. 210521_rna_git.R

Figure eF4

  1. 210331_process_exonerate_git.R

Figure eF6

  1. 210527_yummer_heatmaps_top10up_git.R
  2. 210522_1445_TE_git.R
  3. 210524_1445_heatmaps_git.R
  4. 210518_overlaps_KDM5B_SETDB1_git.R

Figure eF7

  1. 210519_metagenes_git.R
  2. 210513_atac_diffbind_sizefactors_git.R

Figure eF10

  1. 190909_melanoma_salmon_git.R