Pinned Repositories
ci-examples
nextflow-infra
AWS CloudFormation templates for deploying Nextflow infrastructure
BridgeDownstream
Glue pipeline to export Bridge data as Parquet and CSV to Synapse
toil-cluster-infra
Infrastructure for a Toil cluster (http://toil.ucsc-cgl.org)
globquire
require groups of files using glob patterns
groovyServlet
GroovyServlet that uses Spock and Httpunit for unit testing
tthyer's Repositories
tthyer/action-pipenv-aws-setup
Common github action setup steps
tthyer/admincentral-infra
Infrastructure for the AWS AdminCentral account
tthyer/aws-genomics-workflows
Genomics Workflows on AWS
tthyer/aws-infra
Global Sage Bionetworks AWS Infrastructure
tthyer/BridgeDownstream
Glue pipeline to export Bridge data as Parquet and CSV to Synapse
tthyer/cfn-s3objects-macro
The S3Objects macro adds a new resource type: AWS::S3::Object which you can use to populate an S3 bucket.
tthyer/ci-examples
tthyer/cwltest
Framework for testing CWL tools and workflows
tthyer/dockstore-workflow-rnaseq
tthyer/dotfiles
A place to keep dotfiles and other config files
tthyer/dtsa_5301
tthyer/imagecentral-infra
Manage the central AMI repository account
tthyer/infra-utils
Utilities for Sage infrastructure projects
tthyer/itsandbox-infra
An AWS account for Sagebio IT testing.
tthyer/kubernetes-deployments
Kubernetes deployments on ibc EKS cluster
tthyer/nextflow
A DSL for data-driven computational pipelines
tthyer/nextflow-scratch
a repository to test nextflow scripts
tthyer/organizations-infra
Sage AWS Organizations
tthyer/packer-base-ubuntu-bionic
A packer project to build a ubuntu bionic AMI image
tthyer/packer-rstudio
A repository to build an rstudio AMI
tthyer/r-in-spark
Experiments using SparkR and sparklyr
tthyer/sandbox-infra
Automation for the Sage AWS org-sagebase-sandbox account
tthyer/scipool-infra
Project to manage org-sagebase-scipoolprod account on AWS
tthyer/scipooldev-infra
Infrastructure for org-sagebase-scipooldev AWS account
tthyer/service-catalog-library
Library of service catalog templates
tthyer/single-instance-prefect-infra
Infra for a prefect system prototype -- not for use in production
tthyer/spark-json-schema
JSON schema parser for Apache Spark
tthyer/synapse-nextflow
synapseclient cli wrapped in nextflow
tthyer/test-actions
tthyer/toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.