Pinned Repositories
alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
August-2019-consensus-accuracy-update
A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
coursera-dl
Script for downloading Coursera.org videos and naming them.
DupGen_finder
A pipeline used to identify different modes of duplicated gene pairs
estimate_genome_size.pl
Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
fastx_toolkit
FASTA/FASTQ pre-processing programs
hosts
:statue_of_liberty:最新可用的google hosts文件。镜像：
ivideo
一个可以观看国内主流视频平台所有视频的客户端（Mac、Windows、Linux） A client that can watch video of domestic(China) mainstream video platform
jcvi
Python utility libraries on genome assembly, annotation and comparative genomics
Jellyfish
A fast multi-threaded k-mer counter
tw7649116's Repositories
tw7649116/BGSP
Bamboo Genome Sequencing Project
tw7649116/Bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
tw7649116/cactus
Official home of genome aligner based upon notion of Cactus graphs
tw7649116/calc_switchErr
tw7649116/CiLiQuant
Tool to assess relative circular to linear fraction
tw7649116/CON_genome_data
This repository contains the genome sequences and annotation information of the CON genome (Camellia oleifera Abel. var. 'Nanyongnesis').
tw7649116/deepTools
Tools to process and analyze deep sequencing data.
tw7649116/drawio-desktop
Official electron build of diagrams.net
tw7649116/File_Conversions
Scripts to convert between file formats for various analyses
tw7649116/GenomeSyn
tw7649116/GMAT
tw7649116/GMATA
software GMATA
tw7649116/hal
Hierarchical Alignment Format
tw7649116/HiCExplorer
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
tw7649116/IsoQuant
Reference-based transcript discovery from long RNA read
tw7649116/khaper
tw7649116/kraken2
The second version of the Kraken taxonomic sequence classification system
tw7649116/KrakenTools
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
tw7649116/LINKVIEW2
DNA序列比对结果 可视化展示工具
tw7649116/paf2dotplot
Draw a dot plot from a paf alignment
tw7649116/paletteer
🎨🎨🎨 Collection of most color palettes in a single R package
tw7649116/Setaria-pan-genome
Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- genome studies, as well as demographic and genetic studies of Setaria.
tw7649116/snippy
:scissors: :zap: Rapid haploid variant calling and core genome alignment
tw7649116/SSR2Marker
An integrated pipeline for identification of SSR markers
tw7649116/SV
tw7649116/svtools
Tools for processing and analyzing structural variants.
tw7649116/TF_CollaborativeNet
tw7649116/TomatoSuperPanGenome
Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and constructed a pan-genome, revealing phylogenetic relationships and structural variation among Lycopersicon
tw7649116/TRASH
RepeatIdentifier
tw7649116/vcf2gwas
Python API for comprehensive GWAS analysis using GEMMA