Pinned Repositories
alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
August-2019-consensus-accuracy-update
A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
coursera-dl
Script for downloading Coursera.org videos and naming them.
DupGen_finder
A pipeline used to identify different modes of duplicated gene pairs
estimate_genome_size.pl
Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
fastx_toolkit
FASTA/FASTQ pre-processing programs
hosts
:statue_of_liberty:最新可用的google hosts文件。镜像:
ivideo
一个可以观看国内主流视频平台所有视频的客户端(Mac、Windows、Linux) A client that can watch video of domestic(China) mainstream video platform
jcvi
Python utility libraries on genome assembly, annotation and comparative genomics
Jellyfish
A fast multi-threaded k-mer counter
tw7649116's Repositories
tw7649116/SURVIVOR
Toolset for SV simulation, comparison and filtering
tw7649116/krait
An ultrafast tool for genome-wide survey of microsatellites and primer design
tw7649116/geneLift
Gene model transfer from closely related reference genomes using cDNA alignments
tw7649116/ngs-tools
tw7649116/JustOrthologs
tw7649116/SV-Pop
Upscaling SV detection to a multi-population level.
tw7649116/deepTS
deepTS explores transcriptional switch events from pairwise, temporal and population transcriptome data.
tw7649116/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
tw7649116/MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
tw7649116/AGAT
Another Gff Analysis Toolkit
tw7649116/Kmer-SSR
Fast, Accurate, and Complete SSR Detection in Genomic Sequences
tw7649116/GAAS
Genome Assembly and Annotation Service code
tw7649116/Sequence-manipulation
A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats
tw7649116/CallIntrogressions
tw7649116/DupCheck
Genotype putative DUPs by querying short read coverage
tw7649116/urmap
URMAP ultra-fast read mapper
tw7649116/DipAsm
tw7649116/wgd
Python package and CLI for whole-genome duplication related analyses
tw7649116/minia
Minia is a short-read assembler based on a de Bruijn graph
tw7649116/awesome-ggplot2
A curated list of awesome ggplot2 tutorials, packages etc.
tw7649116/bamUtil
tw7649116/IBDHap-detector
Scripts to reproduce Tea IBD detection manuscript
tw7649116/RephasingBins
Scripts for rephasing Bins
tw7649116/gridstudio
Grid studio is a web-based application for data science with full integration of open source data science frameworks and languages.
tw7649116/perf
PERF is an Exhaustive Repeat Finder
tw7649116/eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
tw7649116/Bioinformatics-Problems-Rosalind
:computer: Small coding assignments from Rosalind and some day-to-day fun coding and learning activities.
tw7649116/TeaGenomeData
tw7649116/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
tw7649116/SNP_Primer_Pipeline