twesleyb

twesleyb's Stars

• TheAlgorithms/Python

  All Algorithms implemented in Python

  Language:Python195k5.9k1.5k45.8k

• iterative/dvc

  🦉 Data Versioning and ML Experiments

  Language:Python14k1344.7k1.2k

• tapio/live-server

  A simple development http server with live reload capability.

  Language:JavaScript4.4k54296485

• lh3/bwa

  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  Language:C1.5k107308557

• theislab/single-cell-tutorial

  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

  Language:Jupyter Notebook1.4k45101464

• klmr/box

  Write reusable, composable and modular R code

  Language:R8712029447

• GuangchuangYu/hexSticker

  :sparkles: Hexagon sticker in R

  Language:R7621752169

• mikelove/awesome-multi-omics

  List of software packages for multi-omics analysis

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• const-ae/ggupset

  Combination matrix axis for 'ggplot2' to create 'UpSet' plots

  Language:R35373725

• cole-trapnell-lab/monocle3

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• MarioniLab/miloR

  R package implementation of Milo for testing for differential abundance in KNN graphs

  Language:R345925122

• rstudio/fontawesome

  Easily insert FontAwesome icons into R Markdown docs and Shiny apps

  Language:R294117639

• cole-trapnell-lab/monocle-release

  Language:R28139506116

• dviraran/SingleR

  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

  Language:HTML2752015798

• ropensci-archive/fulltext

  :warning: ARCHIVED :warning: Search across and get full text for OA & closed journals

  Language:R2721821347

• Non-Contradiction/JuliaCall

  Embed Julia in R

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• broadinstitute/ssGSEA2.0

  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

  Language:R250133279

• ropensci/rcrossref

  R client for various CrossRef APIs

  Language:R1702320420

• renozao/NMF

  NMF: A Flexible R package for Nonnegative Matrix Factorization

  Language:R1391618041

• csoneson/conquer_comparison

  Code for evaluation of differential expression methods in single-cell RNA-seq data

  Language:R1115927

• const-ae/glmGamPoi

  Fit Gamma-Poisson Generalized Linear Models Reliably

  Language:R10565915

• matejker/everystreet

  An algorithm finding #everystreet route on Open Street Map (OSMnx)

  Language:Jupyter Notebook10582125

• kyonofx/MDsim

  [TMLR 2023] Training and simulating MD with ML force fields

  Language:Python1045811

• sharlagelfand/ggkeyboard

  Make a keyboard using ggplot2.

  Language:R905312

• LukeGoodsell/nextflow-vim

  Nextflow plugin for VIM

  Language:Vim script484420

• drisso/zinbwave

  Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave

  Language:R4376610

• statOmics/zinbwaveZinger

  Integrating zingeR with ZINB-WaVE weights

  Language:TeX23947

• statOmics/zingeR

  zero-inflated negative binomial gene expression in R

  Language:R20561

• neuro-myoung/NeuralDynamics.jl

  This package contains a convenient analysis and visualization pipeline for simple dynamical models of neurons and networks of neurons.

  Language:Julia9111

• SebVaca/Avant_garde

  Avant-garde (AvG) is a new tool to refine Data-Independent Acquisition (and Parallel Reaction Monitoring) by removing interfered transitions, adjusting integration boundaries and scoring peaks to control the FDR.

  Language:R9232