dviraran/SingleR

Issues

• split test dataset and see differences in annotation

  #164 opened 2 months ago by yamihn
  1

• Assigning cell types problem

  #163 opened 6 months ago by esoaress
  1

• Error while downloading SingleR

  #162 opened 7 months ago by isaiao01
  1

• Error in is.null(rownames(x)) && nrow(x) : invalid 'y' type in 'x && y'

  #147 opened 3 years ago by njtourtillott
  4

• Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE. Traceback:

  #161 opened 7 months ago by ArzooShamoon
  1

• SingleR - "sc_data" is missing

  #160 opened 8 months ago by nitinmahajan20
  1

• Positive correlation between the identity score of the right identities and the rest

  #159 opened 9 months ago by cesarsierran
  0

• SingleR error

  #158 opened 10 months ago by Jessa135
  1

• Annotate Seurat object of several patients

  #157 opened a year ago by LeaLe88
  0

• Can we use SingleR to annotate BulkRNAseq when reference is also bulk

  #156 opened a year ago by Rohit-Satyam
  3

• Microwell-Seq Mouse Cell Atlas link on README.md is not working

  #155 opened a year ago by vladimirkovacevic
  0

• create custom reference dataset

  #148 opened 2 years ago by andynkili
  2

• Questions about confidence score

  #154 opened 2 years ago by Kevis9
  0

• discriminant features

  #153 opened 2 years ago by antoine4ucsd
  0

• SingleR() error

  #150 opened 3 years ago by Fathzadehm
  2

• SingleR install issue

  #128 opened 5 years ago by hi9739
  2

• issue with input?

  #152 opened 2 years ago by eliabrodsky1
  0

• SingleR Performance Issue

  #151 opened 2 years ago by rohitgarg2411
  0

• Error in rowAnyNAs(DelayedArray(x))

  #149 opened 3 years ago by Lijunyao8
  1

• Can't download MouseRNAseqData

  #146 opened 4 years ago by JiahuaQu
  0

• the Seurat3.2.2 load and SingleR 1.0.1 conflict error

  #145 opened 4 years ago by honghh2018
  1

• 'assay(<SingleCellExperiment>, i="character", ...)' invalid subscript 'i' 'dimnames' applied to non-array

  #144 opened 4 years ago by aanchalsharma833
  0

• can i annotate cells in specific cell types?

  #143 opened 4 years ago by hansonglee
  0

• How to annotation cluster by singleR 1.2.4

  #142 opened 4 years ago by zenghh1226
  2

• Retrieving a list of marker genes which were used assign cell type labels to clusters

  #141 opened 4 years ago by jdd1e16
  1

• Cell labeling using SingleR in seurat

  #140 opened 4 years ago by ruchikabhat
  1

• Create SingleR object from an existing seurat object

  #115 opened 5 years ago by naamama
  7

• Seurat object as input and normalization

  #138 opened 4 years ago by Diozao666
  1

• plotDeltaDistribution not found

  #137 opened 4 years ago by r-panero
  1

• how to create a new reference data set

  #136 opened 4 years ago by Shawn10312
  4

• Adding annotations

  #135 opened 5 years ago by AteeqMKhaliq
  2

• can't find any of the functions related to reference data sets

  #134 opened 5 years ago by nawazahid
  1

• Download failed

  #133 opened 5 years ago by chansigit
  1

• Timeout error

  #132 opened 5 years ago by KBoostan
  2

• error in BlueprintEncodeData()

  #131 opened 5 years ago by rachelzhu123
  1

• undefined columns selected

  #126 opened 5 years ago by rahulnutron
  1

• Function"CreateSinglerSeuratObject" was not found! Where's the way out?

  #130 opened 5 years ago by chuanyang-learner
  1

• SingleR web tool

  #124 opened 5 years ago by phoebee-h
  2

• About how to construct the trainning data set for building the annotation database of other species

  #127 opened 5 years ago by BioAIEvolu
  1

• SingleR installation error: ‘SingleR’ is not available (for R version 3.6.1)

  #125 opened 5 years ago by shintzen
  1

• Bug in Dataset function HumanPrimaryCellAtlasData()

  #123 opened 5 years ago by saisaitian
  1

• Error in use the function SingleR.Subset when reproduce the Figures in paper

  #122 opened 5 years ago by duosu
  0

• bug in CreateBigSingleRObject

  #121 opened 5 years ago by systemsgenomics
  1

• Applying of Seurat cell-clustering analysis in SingleR

  #120 opened 5 years ago by erikfel97
  3

• fineTuningRound method

  #117 opened 5 years ago by xiebb123456
  1

• The SingleR.PlotTsne error

  #119 opened 5 years ago by nanshanjin
  0

• can not download sqlite3 file

  #118 opened 5 years ago by BioLaoXu
  1

• Bioconda version of SingleR

  #116 opened 5 years ago by hramadas
  1

• Error in nn.d^2 : non-numeric argument to binary operator

  #113 opened 5 years ago by MMriran
  6

• 'rownames(test)' does not contain all genes used in 'trained'

  #114 opened 5 years ago by Yoon-Seob-Kim
  1