Pinned Repositories
GenomeSPOT
Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
MicrobeMod
A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
bacteria-archaea-trait-prediction-from-genomes
Prediction of traits (optimum growth temperature, salinity, etc.) for bacteria and archaea from genomes
metagenomics-tutorials
Additional scripts from tutorials on tylerbarnum.com
microbial-media-space
Comparison of microbial media
perchlorate-and-chlorate-reduction-2020
Scripts used in the publication Tyler P. Barnum, Yiwei Cheng, Kaisle A. Hill, Lauren N. Lucas, Hans K. Carlson, and John D. Coates. Exploitation of a complete respiratory pathway by a partial respiratory pathway in chlorine oxyanion reduction. In prep.
perchlorate-metagenome-2018
Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and John D. Coates. (2018) Genome-resolved metagenomics identifies genetic mobility, metabolic interactions, and unexpected diversity in perchlorate-reducing communities.
tylerbarnum.github.io
visualizations-in-microbiology
Data and images for communicating concepts in microbiology
tylerbarnum's Repositories
tylerbarnum/perchlorate-metagenome-2018
Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and John D. Coates. (2018) Genome-resolved metagenomics identifies genetic mobility, metabolic interactions, and unexpected diversity in perchlorate-reducing communities.
tylerbarnum/metagenomics-tutorials
Additional scripts from tutorials on tylerbarnum.com
tylerbarnum/visualizations-in-microbiology
Data and images for communicating concepts in microbiology
tylerbarnum/bacteria-archaea-trait-prediction-from-genomes
Prediction of traits (optimum growth temperature, salinity, etc.) for bacteria and archaea from genomes
tylerbarnum/microbial-media-space
Comparison of microbial media
tylerbarnum/perchlorate-and-chlorate-reduction-2020
Scripts used in the publication Tyler P. Barnum, Yiwei Cheng, Kaisle A. Hill, Lauren N. Lucas, Hans K. Carlson, and John D. Coates. Exploitation of a complete respiratory pathway by a partial respiratory pathway in chlorine oxyanion reduction. In prep.
tylerbarnum/tylerbarnum.github.io