typhoidgenomics/genotyphi

Issues

• drug name should be trimethoprim-sulfamethoxazole

  #36 opened 9 months ago by katholt
  1

• Unit testing

  #27 opened 2 years ago by lskatz
  0

• Assumption of AD at col 9 in VCF is flawed

  #22 opened 2 years ago by tseemann
  0

• `samtools mpileup` is being replaced with `bcftools`

  #23 opened 2 years ago by andersgs
  0

• New release to capture parse_typhi_mykrobe.py in Bioconda recipe

  #35 opened 3 years ago by rpetit3
  2

• Code seem broken

  #32 opened 4 years ago by emmannaemeka
  4

• Plans for BioConda release?

  #29 opened 4 years ago by rpetit3
  9

• Versioning

  #26 opened 4 years ago by lskatz
  1

• fail to open fasta file

  #24 opened 5 years ago by hafizmtalha
  1

• Incompatibility issues with v1.5 of SAMtools and BCFtools

  #21 opened 6 years ago by zadyson
  2