XIE LAB @ UCI

Irvine, CA, USA

Pinned Repositories

D-GEX
Deep learning for gene expression inference
Language:Python147 21 957
DanQ
A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences
Language:Groff158 20 1771
DeepLung
WACV18 paper "DeepLung: Deep 3D Dual Path Nets for Automated Pulmonary Nodule Detection and Classification"
Language:Python156 19 2153
esm-efficient
Efficient implementatin of ESM family.
Language:Python52 3 63
FactorNet
A deep learning package for predicting TF binding
Language:Python42 14 311
NoduleNet
[MICCAI' 19] NoduleNet: Decoupled False Positive Reduction for Pulmonary Nodule Detection and Segmentation
Language:Python199 6 5158
PyLOH
Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity
Language:Python39 14 915
RP-Net
Code for Recurrent Mask Refinement for Few-Shot Medical Image Segmentation (ICCV 2021).
Language:Python57 4 99
UaNet
Language:Jupyter Notebook59 4 618
UFold
Language:Python62 11 3230

XIE LAB @ UCI's Repositories

uci-cbcl/NoduleNet
[MICCAI' 19] NoduleNet: Decoupled False Positive Reduction for Pulmonary Nodule Detection and Segmentation
Language:Python199 6 5158
uci-cbcl/DanQ
A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences
Language:Groff158 20 1771
uci-cbcl/DeepLung
WACV18 paper "DeepLung: Deep 3D Dual Path Nets for Automated Pulmonary Nodule Detection and Classification"
Language:Python156 19 2153
uci-cbcl/D-GEX
Deep learning for gene expression inference
Language:Python147 21 957
uci-cbcl/UFold
Language:Python62 11 3230
uci-cbcl/UaNet
Language:Jupyter Notebook59 4 618
uci-cbcl/RP-Net
Code for Recurrent Mask Refinement for Few-Shot Medical Image Segmentation (ICCV 2021).
Language:Python57 4 99
uci-cbcl/esm-efficient
Efficient implementatin of ESM family.
Language:Python52 3 63
uci-cbcl/FactorNet
A deep learning package for predicting TF binding
Language:Python42 14 311
uci-cbcl/PyLOH
Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity
Language:Python39 14 915
uci-cbcl/EXTREME
An online EM implementation of the MEME model for fast motif discovery in large ChIP-Seq and DNase-Seq Footprinting data
Language:C32 10 44
uci-cbcl/HLA-bind
Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction
Language:Python25 11 314
uci-cbcl/DeepCons
Understanding sequence conservation with deep learning
Language:HTML20 13 07
uci-cbcl/DeepEM-for-Weakly-Supervised-Detection-1
MICCAI18 DeepEM: Deep 3D ConvNets with EM for Weakly Supervised Pulmonary Nodule Detection
Language:Jupyter Notebook17 11 09
uci-cbcl/DeepEM-for-Weakly-Supervised-Detection
MICCAI18 DeepEM: Deep 3D ConvNets with EM for Weakly Supervised Pulmonary Nodule Detection
15 12 03
uci-cbcl/BioML
5 4 01
uci-cbcl/ChestXRay
Language:Jupyter Notebook5 9 10
uci-cbcl/MixClone
A mixture model for inferring tumor subclonal populations
Language:Python5 13 04
uci-cbcl/SAILER
Language:Jupyter Notebook5 10 13
uci-cbcl/TEMT
Transcripts abundances estimation from heterogeneous tissue sample of RNA-Seq data (TEMT)
Language:Python5 9 05
uci-cbcl/genomix
Parallel genome assembly using Hyracks
Language:Java3 13 382
uci-cbcl/SAILERX
Language:Jupyter Notebook3 4 10
uci-cbcl/scFAN
Language:Python3 5 01
uci-cbcl/EpiOut
A statistical method to detect, analyze and visualize aberrations in chromatin accessibility (ATAC-seq, DNase-Seq) and quantify its effect on gene expression.
Language:Python2 3 10
uci-cbcl/RBPnet
Language:Python1 10 00
uci-cbcl/ChromDEEP
Chromatin states analysis with deep learning
Language:Python9 0
uci-cbcl/ConsDEEP
Sequence conservatoin analysis with deep learning
Language:Python9 0
uci-cbcl/CoreNLP
Stanford CoreNLP: A Java suite of core NLP tools.
Language:Java
uci-cbcl/DEEMOL
Deep learning for molecular modelling
Language:Python9 0
uci-cbcl/Video-Pre-Training
Video PreTraining (VPT): Learning to Act by Watching Unlabeled Online Videos
Language:Python1 0