ufold_test.py error on clean install on Ubuntu 22.04.4 LTS
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alevitan-cajal commented
python ufold_test.py --test_files TS2
throws an error after clean install on Ubuntu 22.04.4 LTS:
Traceback (most recent call last):
File "/root/UFold/ufold_test.py", line 341, in <module>
main()
File "/root/UFold/ufold_test.py", line 274, in main
test_data = RNASSDataGenerator('data/',test_file+'.cPickle')
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/root/UFold/ufold/data_generator.py", line 28, in __init__
self.load_data()
File "/root/UFold/ufold/data_generator.py", line 46, in load_data
self.pairs = np.array([instance[-1] for instance in self.data])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (38,) + inhomogeneous part.
I've found numpy github issues that suggest this is due to the version of numpy specified in the conda yaml file, but looking for more details.
Thanks!