ucsfpan

Pinned Repositories

Potato_C88
Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning
Language:Python23 2 53
hmftools
Various algorithms for analysing genomics data
Language:Java198 19 46360
gridss
GRIDSS: the Genomic Rearrangement IDentification Software Suite
Language:Java258 23 65771
xTea
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
Language:Python102 9 12023
lorax
A long-read analysis toolbox for cancer and population genomics
Language:C++20 3 11
acorde
Isoform co-usage networks from single-cell RNA-seq data
Language:HTML00
cactus
Official home of genome aligner based upon notion of Cactus graphs
Language:C00
vg
tools for working with genome variation graphs
Language:C++00
HiC_pipeline
An easy-to-use Hi-C data processing software supporting distributed computation.
Language:Python55 6 1620
HapHiC
HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
Language:Python142 4 9010

ucsfpan's Repositories

ucsfpan/acorde
Isoform co-usage networks from single-cell RNA-seq data
Language:HTML00
ucsfpan/cactus
Official home of genome aligner based upon notion of Cactus graphs
Language:C00
ucsfpan/vg
tools for working with genome variation graphs
Language:C++00