ugerlevik
PhD student - Biochemistry; MSc - Biostatistics and Bioinformatics; BSs - Molecular Biology and Genetics
Mellor Lab, University of OxfordOxford, United Kingdom
Pinned Repositories
BBMap
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
deepTools
Tools to process and analyze deep sequencing data.
DENR
Select the most actively transcribed transcript model using PRO-seq
FLNA_analysis
All used scripts for the analysis of molecular dynamics simulation trajectories of wild-type and mutant FLNA systems.
ggstride
Protein Secondary Structure Analysis and Visualization for Trajectories
M1AP_analysis
The codes used in to analyze the meiosis 1-associated protein (M1AP) model in comparison with its mutant forms observed in the patients diagnosed with non-obstructive azoospermia and cryptozoospermia.
MexNab_3seq
Analysis for Tudek et al and Schmid et al
MS_Metagene_Tools
various tools and addons to fidelrams deepTools python suite
nascentRNASim
A package for empirical simulation of nascent RNA data
r-bioc-limma
ugerlevik's Repositories
ugerlevik/ggstride
Protein Secondary Structure Analysis and Visualization for Trajectories
ugerlevik/BBMap
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
ugerlevik/deepTools
Tools to process and analyze deep sequencing data.
ugerlevik/DENR
Select the most actively transcribed transcript model using PRO-seq
ugerlevik/FLNA_analysis
All used scripts for the analysis of molecular dynamics simulation trajectories of wild-type and mutant FLNA systems.
ugerlevik/M1AP_analysis
The codes used in to analyze the meiosis 1-associated protein (M1AP) model in comparison with its mutant forms observed in the patients diagnosed with non-obstructive azoospermia and cryptozoospermia.
ugerlevik/MexNab_3seq
Analysis for Tudek et al and Schmid et al
ugerlevik/MS_Metagene_Tools
various tools and addons to fidelrams deepTools python suite
ugerlevik/nascentRNASim
A package for empirical simulation of nascent RNA data
ugerlevik/r-bioc-limma
ugerlevik/RMetaTools
R package with various tools for metagene analysis
ugerlevik/RNAseq_coexpression
In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.