ugerlevik

ugerlevik's Stars

• CshlSiepelLab/nascentRNASim

  A package for empirical simulation of nascent RNA data

  Language:R22

• manschmi/RMetaTools

  R package with various tools for metagene analysis

  Language:R11

• dvanoni/notero

  A Zotero plugin for syncing items and notes into Notion

  Language:TypeScript2.1k94

• tanlongzhi/dip-c

  Tools to analyze Dip-C (or other 3C/Hi-C) data

  Language:Python5618

• Significant-Gravitas/AutoGPT

  AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.

  Language:Python164k43.4k

• sokrypton/ColabFold

  Making Protein folding accessible to all!

  Language:Jupyter Notebook1.8k460

• krishnanlab/RNAseq_coexpression

  In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.

  Language:HTML113

• ciaranlevans/rnaSeqAssumptions

  Contains simulation code for evaluating RNA-Seq normalization methods when assumptions are violated

  Language:R62

• nf-core/nascent

  Nascent Transcription Processing Pipeline

  Language:Nextflow1410

• manschmi/MS_Metagene_Tools

  various tools and addons to fidelrams deepTools python suite

  Language:Python22

• BioInfoTools/BBMap

  (Not Offical) BBMap short read aligner, and other bioinformatic tools.

  Language:Java202113

• berkgurdamar/berkgurdamar

  1

• r-lib/actions

  GitHub Actions for the R community

  Language:TypeScript930201

• berkgurdamar/Cell2Cell-Workshop

  Integrated analysis for scRNA and scATAC seq data :rocket:

  Language:R3

• manschmi/MexNab_3seq

  Analysis for Tudek et al and Schmid et al

  23

• Peldom/papers_for_protein_design_using_DL

  List of papers about Proteins Design using Deep Learning

  1.2k150

• berkgurdamar/predatoR

  Mutation Impact Predition Based on Network Properties

  Language:R7

• berkgurdamar/RNASeq-Pipeline

  RNASeq-Pipeline for Quantification and Enrichment Analysis

  Language:Python12

• 4dn-dcic/docker-4dn-hic

  Docker for 4DN Hi-C processing pipeline

  Language:Common Workflow Language5517

• open2c/cooler

  A cool place to store your Hi-C

  Language:Python19652

• hms-dbmi/hic-data-analysis-bootcamp

  Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.

  Language:Jupyter Notebook18747

• narodkebabci/gRoR

  A workflow to get rid of redundant mutations

  Language:R7

• egeulgen/PANACEA

  Personalized Network-based Anti-Cancer Therapy Appointment

  Language:R9

• kingsfordgroup/armatus

  Language:C++2510

• Kingsford-Group/chromatingnm

  Language:Matlab1

• ozlemsalehi/bronze

  Material used for the introduction to quantum programming workshop prepared by QLatvia and edited by QTurkey

  Language:Jupyter Notebook2811

• lucidrains/alphafold2

  To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

  Language:Python1.5k255

• fish-quant/big-fish

  Toolbox for the analysis of smFISH images.

  Language:Python5518

• micron-facility/micron-course-2019

  101

• ggirelli/ood-fish

  Orthogonal Oligo Design for Fluorescence In Situ Hybridization (a.k.a. OOD-FISH)

  Language:R42