umngao

umngao's Stars

• glentner/hypershell

  Cross-platform, high-throughput computing utility for processing shell commands over a distributed, asynchronous queue.

  Language:Python162

• mikolmogorov/Flye

  De novo assembler for single molecule sequencing reads using repeat graphs

  Language:C744164

• s-a-nersisyan/ExhauFS

  Language:Python101

• nanoporetech/dorado

  Oxford Nanopore's Basecaller

  Language:C++44554

• shihuang047/2bRAD-M

  Language:Perl1510

• cxli233/FriendsDontLetFriends

  Friends don't let friends make certain types of data visualization - What are they and why are they bad.

  Language:R6.2k213

• brentp/smoove

  structural variant calling and genotyping with existing tools, but, smoothly.

  Language:Go22221

• guoweilong/cgmaptools

  toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR

  Language:C6126

• PGSB-HMGU/plant.annot

  Annotation pipeline for plant genomes by PGSB

  Language:Python93

• nf-core/rnaseq

  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  Language:Nextflow810673

• chhylp123/hifiasm

  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

  Language:C++50184

• steuernb/AgRenSeq

  Language:Java125

• mcfrith/last-genome-alignments

  475

• xuzhougeng/R-ChIP-data-analysis

  Language:Shell5015

• conJUSTover/pSONIC

  The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).

  Language:HTML183

• vgteam/vg

  tools for working with genome variation graphs

  Language:C++1.1k191

• tanghaibao/jcvi

  Python library to facilitate genome assembly, annotation, and comparative genomics

  Language:Python713185

• oushujun/EDTA

  Extensive de-novo TE Annotator

  Language:Perl31770

• davidliwei/awesome-CRISPR

  List of software/websites/databases/other stuff for genome engineering

  473105

• YinLiLin/CMplot

  📊 Circular and Rectangular Manhattan Plot

  Language:R499111

• edgardomortiz/vcf2phylip

  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

  Language:Python27184

• wilkox/gggenes

  ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

  Language:R47749

• rasbt/stat451-machine-learning-fs20

  STAT 451: Intro to Machine Learning @ UW-Madison (Fall 2020)

  Language:Jupyter Notebook376190

• PacificBiosciences/pbmm2

  A minimap2 frontend for PacBio native data formats

  Language:Perl16625

• nservant/HiC-Pro

  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

  Language:Python372181

• jhpoelen/zenodo-upload

  upload big files to Zenodo using cURL, jq and bash

  Language:Shell20732

• steuernb/NLR-Annotator

  NLR-Annotator upload

  Language:Java5424

• BGI-shenzhen/LDBlockShow

  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

  Language:Perl13039

• simonhmartin/genomics_general

  General tools for genomic analyses.

  Language:Python31692

• lh3/minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C1.7k401