/dmapaq

DNA Methylation Arrays Processing And Quality-Control

Primary LanguageRGNU General Public License v3.0GPL-3.0

DNA Methylation Arrays Processing And Quality-Control

Lifecycle: questioning GitHub tag R build status

Installation

# Install dmapaq from CRAN:
install.packages("dmapaq")

# Or the the development version from GitHub:
# install.packages("remotes")
remotes::install_github("umr1283/dmapaq")

Overview

  • read_idats() allows to efficiently import idats files mostly using minfi functions.
  • qc_idats() allows to compute quality-control of methylation array from Illumina using a rmarkdown template.

Getting help

If you encounter a clear bug, please file a minimal reproducible example on github.
For questions and other discussion, please contact the package maintainer.

Code of Conduct

Please note that the dmapaq project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.