Pinned Repositories
2023.11.08.CommandLineBasics
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
bisulfite_seq_analysis
Blobtools_for_removing_contaminations_in_genome_assembly
This repository contains scripts I used to create blob database for a de novo genome assembly for visualisation and removing contaminants
circos
Computational_genomics
Sphinx documentation source for a computational genomics tutorial.
denovo-RNA-Seq-On-Nesi
This is a compilation of my scripts for denovo-RNA-Seq assembly, annotation, and get count metrics for Differential gene expression analysis in Nesi hpc.
Earwig_genome_project
This repository contains all the scripts used to assemble and annotate the Earwig genome
ForLoopsInShell
Long_read_genome_assembly
This is a compilation of the scripts I used for genome assembly using long read sequencing data
upendrabhattarai's Repositories
upendrabhattarai/Long_read_genome_assembly
This is a compilation of the scripts I used for genome assembly using long read sequencing data
upendrabhattarai/Earwig_genome_project
This repository contains all the scripts used to assemble and annotate the Earwig genome
upendrabhattarai/2023.11.08.CommandLineBasics
upendrabhattarai/academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
upendrabhattarai/Blobtools_for_removing_contaminations_in_genome_assembly
This repository contains scripts I used to create blob database for a de novo genome assembly for visualisation and removing contaminants
upendrabhattarai/circos
upendrabhattarai/denovo-RNA-Seq-On-Nesi
This is a compilation of my scripts for denovo-RNA-Seq assembly, annotation, and get count metrics for Differential gene expression analysis in Nesi hpc.
upendrabhattarai/ForLoopsInShell
upendrabhattarai/Genomic-Interactive-Visualization-Engine
Genomic Interactive Visualization Engine
upendrabhattarai/GMFBI
Genetic models from basal insects
upendrabhattarai/gcp-for-bioinformatics
GCP for Bioinformatics Researchers
upendrabhattarai/homemade-machine-learning
🤖 Python examples of popular machine learning algorithms with interactive Jupyter demos and math being explained
upendrabhattarai/Image-Analysis-with-ImageJ
upendrabhattarai/Introduction_to_R
upendrabhattarai/knowledgebase
recipes that save time
upendrabhattarai/moon_theme_personal.website
Personal Website
upendrabhattarai/mypipeline
upendrabhattarai/Nematode_genome_assembly
Workflow for nematode genome assembly using ONT and 10x reads
upendrabhattarai/Nematode_Genome_Project
Scripts used for the curation and annotation of Nematode genome
upendrabhattarai/processing_230104_PREP0300_UBhattarai
upendrabhattarai/Repeatome_analysis
upendrabhattarai/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
upendrabhattarai/scRNA-seq_online
upendrabhattarai/shell-genomics
Introduction to the Command Line for Genomics
upendrabhattarai/test
test
upendrabhattarai/Training-modules
Materials for short, half-day workshops
upendrabhattarai/upendrabhattarai
upendrabhattarai/upendrabhattarai.github.io
Personal website
upendrabhattarai/upendrabhattarai.github.io.another.one
Personal website
upendrabhattarai/workshops