Pinned Repositories
2023.11.08.CommandLineBasics
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
bisulfite_seq_analysis
Blobtools_for_removing_contaminations_in_genome_assembly
This repository contains scripts I used to create blob database for a de novo genome assembly for visualisation and removing contaminants
circos
Computational_genomics
Sphinx documentation source for a computational genomics tutorial.
denovo-RNA-Seq-On-Nesi
This is a compilation of my scripts for denovo-RNA-Seq assembly, annotation, and get count metrics for Differential gene expression analysis in Nesi hpc.
Earwig_genome_project
This repository contains all the scripts used to assemble and annotate the Earwig genome
ForLoopsInShell
Long_read_genome_assembly
This is a compilation of the scripts I used for genome assembly using long read sequencing data
upendrabhattarai's Repositories
upendrabhattarai/bisulfite_seq_analysis
upendrabhattarai/nematode_annotation
Annotation of nematode genome using maker pipeline
upendrabhattarai/Hi-C-workshop
upendrabhattarai/Intro-to-R-with-DGE
upendrabhattarai/Computational_genomics
Sphinx documentation source for a computational genomics tutorial.
upendrabhattarai/ggplotting