Pinned Repositories
nairobi-bot
IRC bot (not limited to #nairobilug)
dsa
Degenerate String Aligner based on dwflambda
flex-vg
graphite
A varitation graph tool
povu
sketch of bubble detection via dominator trees
Project
Exploring Virus Sequence Diversity Using Variation Graphs
taxophages
Clustering viruses
wai-devel
A development server for wai applications.
wfa
Rust WFA and WFλ
wffilter
Filter over local alignments with a global alignment.
urbanslug's Repositories
urbanslug/wai-devel
A development server for wai applications.
urbanslug/dsa
Degenerate String Aligner based on dwflambda
urbanslug/wfa
Rust WFA and WFλ
urbanslug/wffilter
Filter over local alignments with a global alignment.
urbanslug/flex-vg
urbanslug/povu
sketch of bubble detection via dominator trees
urbanslug/wflambda
Rust implementation of wflambda.
urbanslug/dwflambda
wfλ for degenerate texts
urbanslug/notes
urbanslug/aedso
Generate an EDS from a VCF and Fasta
urbanslug/ALeS
ALeS: Adaptive-length spaced-seed design
urbanslug/Bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
urbanslug/eds
(E)D Text parser
urbanslug/fbox
Utility functions
urbanslug/guix-genomics
guix packages for bioinformatics software
urbanslug/hsx
urbanslug/junctions
Compare pangenomes using ED-Strings
urbanslug/lastz
Program for aligning DNA sequences, a pairwise aligner.
urbanslug/MashMap
A fast approximate aligner for long DNA sequences
urbanslug/mashz
urbanslug/mutatrix
genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorphisms
urbanslug/ndarray-to-img
Visualize (sparse) matices
urbanslug/nested-data-structure-traversal
urbanslug/njagi.me
Personal website/blog
urbanslug/pggb
the pangenome graph builder
urbanslug/simed
Simulate Degenerate Text
urbanslug/urbanslug.github.io
urbanslug/wfilter
urbanslug/wflign
the we-flyin WFA-guided ultralong tiling sequence aligner
urbanslug/wfmash
base-accurate DNA sequence alignments using WFA and mashmap2