Automata based Degenerate String and Elastic Degenerate String parser
cargo doc --open
Degenerate letters are between brackets. Variants are separated by commas.
ATCGATGGG{T,C}AACTT{T,G}AG{G,T}CCGGTTTATATTGAT{T,C}CCTA{T,G}{T,A}{A,T}A{T,A}GGGGGTCCTTTGCTTGCTGTTG{A,G}CTC{T,G}TGAGTGAGCTTGCGAGATA
| Symbol | State |
|---|---|
| D | Degenerate Letter |
| S | Solid String |
| Symbol | Char |
|---|---|
| N | Nucleotide |
| C | Comma |
| O | Open bracket / degenerate letter start / solid string end |
| E | Closing bracket / degenerate letter end / solid string start |
- Generate Elastic Degenerate Text from fasta file and VCF https://github.com/urbanslug/aedso
- Generate random Degenerate Text https://github.com/urbanslug/simed
- Generate random Elastic Degenerate Text https://github.com/webmasterar/EDSRand