Pinned Repositories
phylostratr
An R framework for phylostratigraphy
COVID-19-RNA-Seq-datasets
A repository for sharing information on available COVID-19 RNA-Seq datasets
COVID-biorxiv
Flexible query for biorxiv and medRxiv COVID-19 collection
COVID-DEA
African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors that are associated with immunologic and infectious functions and environmental exposures
csvtoxl
Easily convert csv/tsv to excel (xlsx) taking care of gene names or other data vulnerable to auto conversion by MS-Excel
MetaOmGraph
MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
orfipy
Fast and flexible ORF finder
PLncPRO
A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)
pyrpipe
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
TCGA-Data-Analysis
Examples on processing and working with TCGA mutation and RNA-Seq data
urmi-21's Repositories
urmi-21/pyrpipe
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
urmi-21/COVID-19-RNA-Seq-datasets
A repository for sharing information on available COVID-19 RNA-Seq datasets
urmi-21/orfipy
Fast and flexible ORF finder
urmi-21/MetaOmGraph
MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
urmi-21/PLncPRO
A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)
urmi-21/COVID-DEA
African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors that are associated with immunologic and infectious functions and environmental exposures
urmi-21/csvtoxl
Easily convert csv/tsv to excel (xlsx) taking care of gene names or other data vulnerable to auto conversion by MS-Excel
urmi-21/COVID-biorxiv
Flexible query for biorxiv and medRxiv COVID-19 collection
urmi-21/covid-quantification
A pipeline to quantify COVD-19 infected RNA-Seq samples
urmi-21/Human_orphan_genes
A pan-tissue pan-cancer compendium of human orphan genes
urmi-21/sra-pyutils
Easy SRA metadata
urmi-21/bioconda-recipes
Conda recipes for the bioconda channel.
urmi-21/COVID_RNASeq_workshop_2021
Hands on workshop for RNA-Seq analysis using pyrpipe, conda and snakemake
urmi-21/hap.py
Haplotype VCF comparison tools
urmi-21/hello-julia
Trying out Julia language
urmi-21/maize_pyrpipe
urmi-21/microarrayDataProcessing
urmi-21/mikado_compare_test
mikado_compare_test
urmi-21/mikado_test
Testing mikado tool
urmi-21/ORIS
ORIS: An interactive software tool for prediction of replication origin in prokaryotic genomes
urmi-21/orphan-prediction
methods for orphan gene prediction paper optimization
urmi-21/phylostratr
An R framework for phylostratigraphy
urmi-21/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
urmi-21/riboseq
scripts used for riboseq analysis
urmi-21/rna-seq-kallisto-sleuth
A workflow for RNA-seq differential expression analysis based on Kallisto and Sleuth.
urmi-21/RNA-Seq-Normalization-Notes
My notes on RNA-Seq Normalization methods
urmi-21/scalable_synteny
Synteny analysis pipeline implemented in a scalable, parallelized manner
urmi-21/urmi-21
urmi-21/urmi-21.github.io
:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.
urmi-21/urminder_singh_resume
My Résumé and CV