Code used to generate data and figures for Achinger-Kawecka et al. "Epigenetic therapy suppresses tumour growth by rewiring ER-mediated long-range chromatin interactions in ER+ endocrine-resistant breast cancer"
Organised into scripts for:
- Genome-wide Hi-C
For Hi-C saddle plots and compartment scores see: https://github.com/qianxidu/Replication_Timing_Du_et_al_2021/blob/main/Du_et_al_R_processing.Rmd
- Promoter Capture Hi-C
- RNA-seq (poly-A) including TE transcript / repeat analyses